General information for g3894.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Sodium channel protein para.
Parent gene
- The parent gene g3894 is located on chr_3: 28649934..28682385 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3894 | g3894.t1 | isoform | g3894.t1 | 28649934 | 28682385 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon1 | 28649934 | 28650941 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS1 | 28649934 | 28650941 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon2 | 28651654 | 28651958 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS2 | 28651654 | 28651958 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon3 | 28652469 | 28652739 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS3 | 28652469 | 28652739 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon4 | 28653019 | 28653264 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS4 | 28653019 | 28653264 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon5 | 28653328 | 28653522 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS5 | 28653328 | 28653522 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon6 | 28653592 | 28653714 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS6 | 28653592 | 28653714 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon7 | 28654455 | 28654577 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS7 | 28654455 | 28654577 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon8 | 28655498 | 28655671 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS8 | 28655498 | 28655671 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon9 | 28655739 | 28655998 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS9 | 28655739 | 28655998 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon10 | 28656067 | 28656277 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS10 | 28656067 | 28656277 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon11 | 28656544 | 28656746 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS11 | 28656544 | 28656746 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon12 | 28657596 | 28657800 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS12 | 28657596 | 28657800 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon13 | 28657881 | 28658065 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS13 | 28657881 | 28658065 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon14 | 28658577 | 28658739 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS14 | 28658577 | 28658739 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon15 | 28659572 | 28659745 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS15 | 28659572 | 28659745 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon16 | 28659812 | 28660092 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS16 | 28659812 | 28660092 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon17 | 28662140 | 28662208 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS17 | 28662140 | 28662208 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon18 | 28662265 | 28662373 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS18 | 28662265 | 28662373 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon19 | 28662452 | 28662886 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS19 | 28662452 | 28662886 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon20 | 28664250 | 28664534 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS20 | 28664250 | 28664534 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon21 | 28665255 | 28665419 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS21 | 28665255 | 28665419 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon22 | 28665717 | 28665861 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS22 | 28665717 | 28665861 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon23 | 28665941 | 28666007 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS23 | 28665941 | 28666007 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon24 | 28666101 | 28666307 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS24 | 28666101 | 28666307 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon25 | 28666374 | 28666465 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS25 | 28666374 | 28666465 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon26 | 28667369 | 28667497 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS26 | 28667369 | 28667497 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon27 | 28667705 | 28667910 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS27 | 28667705 | 28667910 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon28 | 28667981 | 28668136 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS28 | 28667981 | 28668136 |
| chr_3 | g3894 | g3894.t1 | exon | g3894.t1.exon29 | 28682239 | 28682385 |
| chr_3 | g3894 | g3894.t1 | cds | g3894.t1.CDS29 | 28682239 | 28682385 |
| chr_3 | g3894 | g3894.t1 | TSS | g3894.t1 | NA | NA |
| chr_3 | g3894 | g3894.t1 | TTS | g3894.t1 | NA | NA |
Sequences
>g3894.t1 Gene=g3894 Length=6339
ATGTCCGACGACTCCAGTTCGTTACTCGAGGAAGAACGTAGCTTGTTCCGTCCCTTCACC
CGCGAATCACTTTTGGCTATTGAAGCTCGTATTGCAGAGGAATTAGAAAAACAAAAAGAA
CTCGAAAAGAGGAGAGCTGAGGGAGAGATACGATATGATGATGAGGATGAAGATGAAGGT
CCTCAACCAGATCCAACACTCGAGCAAGGTGTACCTATCCCTGTTCGAATGCAAGGCAAT
TTCCCCGCAGAACTGGCCGCCACGCCTCTCGAGGATATTGATTCATTTTATTCAAACCAA
AGAACCTTCGTAGTTGTAAGCAAAGGCAGAGATATTTTTCGTTTTTCTGCAACAAACGCA
TTATGGTTACTTGATCCGTTCAATCCAATTCGTCGCGTAGCTATTTATATTCTAGTTCAT
CCACTTTTTTCGTTATTCATTATTACGACTATCCTCACAAATTGTATATTAATGATAATG
CCGTCATCGCCCTTAATAGAATCAACAGAGGTGATATTCACCGGAATCTACACATTCGAA
TCAGGTGTTAAAGTTATGGCACGAGGTTTCATTTTACAACCGTTTACTTATCTTAGGGAT
GCATGGAATTGGTTGGACTTCATAGTTATAACATTAGCTTACGTAACTATGGGTATCGAT
TTGGGAAACTTAGCTGCATTGAGAACATTCAGGGTACTTCGTGCACTCAAAACAGTAGCT
ATCGTTCCGGGTTTGAAGACTATCGTCGGTGCTGTCATTGAGTCCGTGAAGAATTTGCGT
GATGTAATCATTTTGACTATGTTTTCACTCTCTGTCTTTGCACTCATGGGTCTGCAAATT
TACATGGGTGTACTGACGCAAAAATGCATAAAACGATGGGATGGCTCATGGGGAAATTTT
AGCCATGAGCTGTGGCATCAGTTCTGCAAAAATAGCACAAATTGGTATTATGGTCCCGAT
GAGCCACTTGATCCACCTGTCTGTGGCAATTCATCTGGTGCTGGGCAATGTGAGGAAGAT
TATGTCTGTTTGCAAGGATTTGGTCCAAATCCTAATTATGGTTACACCAGTTTTGATACA
TTCGCATGGGCTTTTCTATCTGCTTTCCGTCTTATGACACAGGATTTCTGGGAAAACTTA
TATCAATTGGTGTTACGCTCAGCTGGACCGTGGCACATGCTCTTCTTCATTGTGATTATC
TTCTTGGGTTCGTTTTACCTTGTAAATTTAATCTTGGCCATTGTCGCCATGTCGTACGAC
GAACTCCAGAAGAAGGCCGAGGAGGAAGAGGCCGCCGAGGAAGAAGCACTTAGGGAAGCT
GAAGAAGCCGCGGCAGCTCGACAAGCAAAAATCGAAGCTCACGCGGCGGCAGCAGCTGCC
TCAGCCCAAGCGGCAATGGAGCCGGAGCAAATTGCAAAAAGCCCATCGGACTTTTCATGT
CACTCATATGAACTGTTTGTGGGTCAGGAGAAAGGCAATGACGATAACAACAAAGAGAAA
ATGTCAATTAGAAGCGAAGGATTGGAGTCGGTGAGCGAAATCACAAGAACAGCACCAACA
GCTCTTGCTTCAGCTAAACAAGCACGAAAAGTTAGCACGACTTCACTTTCGCTTCCCGGT
TCGCCTTTCAATCCTCGTCGTGGCTCACGTGGTTCACATCAGTTCACATTACGAAATCGT
GGACGGTTTGTTGGCGTGTCATCGAGTAATGATCGAAAGCCATTAGTTCTACAAACATAC
CTAGATGCACAGGAACATCTTCCTTATGCAGACGACTCTAATGCTGTCACACCCATGTCT
GAAGAAAATGGTGCAATTATTGTTCCCGTTTATTATGCAAATTTGGGATCAAGACACTCG
TCATATACATCACATCAATCGCGAATATCGTATACATCTCATGGTGATTTGCTAGGTGGA
ATGACAAAAGAAAGTAGATTACGTGGACGATCGAGAAATCATGCCATAATTCAGCAACAG
CCAACGTCAGCTTCATCTTATGCAGATACCAATCATAAGGGACATCGAGAATATTCTCTA
CAAGAAATGTCTCAAGACTGTACGGATGAAGCAGGCAAAATTAAAAGTAGTAATCCATTT
ATTGAGGAGCCAGCTCAATCAAATGCTGTTGTAGATATGAAAGATGTGATGGTGCTTAAT
GATATCATAGAGCAAGCAGCTGGTCGTCATAGTCGAGCAAGTGAGCATGGAGTGTCTGTC
TACTATTTCCCAACAGAAGAAGAGGATGACGAAGATGGACCCACTTTCAAAGAGAAGATG
ATTGAAGTGGCGCTTAAGAGCATCGACATCTTTTGTATATGGGACTGCTGTTCATGTTGG
CTAAAATTCCAAGAGATGGTTGGATGGCTCGTCTTCGATCCATTCGTTGAGTTGTTTATT
ACACTTTGTATTGTCATCAATACACTGTTTATGGCACTTGATCATCACAATATGAATAGA
GATATTGAAAAAATTTTAAAGACTGGCAACTATTTTTTCACTGCAACCTTCGGCATTGAA
GCAACATTAAAACTTGTCGCAATGAGTCCAAAATTTTATTTCCAGGAAGGCTGGAATATT
TTTGATTTCATAATTGTAGCATTATCATTACTTGAATTAGGCTTAGAAGGTGTTCAAGGT
TTATCTGTATTACGTTCATTTAGATTGCTGCGTGTGTTCAAGTTAGCTAAATCATGGCCA
ACATTAAATCTTTTGATTTCGATTATGGGTCGAACGATGGGTGCATTGGGTAACCTAACG
TTCGTCTTGTGTATTATCATCTTCATATTTGCCGTAATGGGAATGCAACTATTTGGCAAA
AATTATCACGATAATGTGCATAAGTTTAGAGATGGAATGCCACGATGGAATTTTACGGAT
TTCATGCATTCATTTATGATAGTATTTCGAGTACTTTGCGGAGAATGGATCGAGAGTATG
TGGGACTGTATGTTCGTCGGTGACGTGTCTTGCATACCATTCTTCTTAGCTACAGTAGTA
ATAGGCAACTTAGTCGTTCTTAATCTTTTCTTAGCCTTGCTTTTGTCCAATTTTGGTTCA
TCGAGCTTATCAGCACCAACGGCCGATTCAGAAACGAATAAAATTGCGGAAGCATTCAAT
AGAATATCCCGATTTAAGAAATGGGTCAAGCAGAGTATATTAAATTGTCTGAAGGGACTG
AAAAATAAAGTAACGAATCAAATATCAGTACAGCCATCAGCATTAGCAAAGCGGCTTCCT
TGTCTATCCTCAGAAAATGGTGGTGATGAGCTAGAAATCAGTGGCGATGAAATACTTGCG
GATGGACTGATAAAGAAAGGAAAAGAAAATCAGTTAGAAGTTGCGATAGGCGATGGCATG
GAATTTACGATACATGGAGATTTAAAAAACAAATCAAAGAAAAAACTTATGAATAACTCA
AAAATGATAGGAAATTCAATCACACACGATAATAGATTAGATGAGCTAAATCATAGAGGC
ATGTCCTTGCAGGACGATGACACTGCCAGTATTAAATCATATGGAAGTCATAAAAATCGA
CCATTCAAAGATGAAAGTCATAAAGGAAGTGCTGAAACGATAGATGGTGAAGAGAAACGT
GATGTAAGCAAGGAGGATTTGGGAATTGATGAAGATGAAGAAGGCGAAGAGGAAGAAGAA
GAAGTACCACACCATGGCATAATTCACGCTGAAGAGGATGAAGTCATTGAGGAATCACCA
GCCGATTGCTTCCCCGAGCACGTTTATCAACGTTTTCCATTTCTGGCTGGTGATGACGAT
GCTCCATTCTGGCAAGGATGGGCCAATTTGCGCTTGAAAACTTTCCAATTGATTGAGAAC
AAATATTTCGAGACAGCTGTAATTACGATGATCTTGCTCAGTAGTTTAGCTTTGGCTTTA
GAAGATGTTCATCTTCCGGATAGACCAATATTACAAGATATATTATATTACATGGATCGA
ATATTCACCGTGATATTTTTCATAGAAATGTTAATTAAATGGTTAGCTTTAGGTTTTCAA
GTGTATTTCACGAACGCTTGGTGTTGGCTTGATTTTGTTATCGTCATGGTATCCCTCATC
AACTTCATTGCTTCACTCTGTGGAGCTGGTGGTATTCAAGCTTTCAAAACAATGCGTACG
CTAAGGGCACTCAGACCTCTTCGTGCCATGTCGCGTATGCAAGGAATGAGGGTTGTCGTC
AATGCATTGGTACAAGCGATACCGTCCATCTTCAATGTACTTTTAGTTTGTTTGATATTT
TGGCTTATATTTGCAATTATGGGCGTACAACTTTTTGCCGGTAAATACTTTAAGTGCGTC
GATGCTAACGGAACAACTTTGGATAAAGAAATTATACCAGATCGTAATGTATGTAAAGCT
GAAAATTACTCATGGGAAAATTCACCAATGAATTTCGATCACGTGGGCAAAGCATATTTG
TGCCTATTTCAAGTAGCAACATTTAAGGGTTGGATACAAATAATGAATGATGCAATCGAT
TCAATAGATGTGGATATTCAACCTTTGCGTGAAACTAACATCTATATGTATCTCTACTTT
GTATTCTTCATCATCTTTGGGTCATTCTTTACGTTAAATCTCTTCATTGGTGTCATCATT
GATAACTTCAACGAGCAAAAGAAGAAGGCTGGTGGATCACTCGAGATGTTCATGACAGAA
GATCAGAAAAAATACTACAATGCCATGAAAAAAATGGGTTCAAAGAAACCGATGAAAGCC
ATTCCGAGACCAAGATGGCGTCCTCAAGCAATAGTTTTTGAATTAGTTACAAATAAGAAA
TTCGACATGATTATTATGTTATTCATTGGTCTGAATATGTTAACAATGACACTTGATCAC
TATCAACAAACCGAGATCTTCACACTCATTCTCGATTATTTGAACATGATATTCATCGCC
ATATTTAGTACCGAGTGTTTGATGAAAATTTTCGCACTTAGATATCATTATTTCGTTGAA
CCATGGAATTTGTTTGATGTTGTCGTGGTAGTACTTTCCATATTAAGTTTGGTATTGAGC
GATTTAATTGAAAAGTATTTTGTGTCACCGACATTATTGCGTGTTGTACGTGTAGCAAAA
GTTGGACGTGTGCTACGTCTCGTCAAAGGAGCAAAGGGAATTCGAACGTTACTTTTCGCC
TTGGCTATGTCATTGCCAGCCTTGTTCAATATCTGTCTACTGCTATTCTTAGTCATGTTT
ATCTTTGCCATATTCGGTATGTCATTCTTTATGCACGTCAAGAAGAAGAGTGGCATCGAT
GATGTCTACAATTTTGAAACGTTCGGACAGAGTATGATTTTACTGTTTCAAATGTCGACA
TCAGCTGGATGGGATGGTGTATTAGATGGTATAATCAATGAAGACGAATGCGATCCACCA
AATCCAGAGATCGGTTTTCCTGGCAATTGCGGTTCAGCTACCGTTGGCATAACTTTTATG
TTAACATATCTTGTTATTAGCTTCTTAATTGTGATCAACATGTACATCGCTGTGATTTTG
GAAAATTACTCGCAGGCGACAGAAGATGTGCAAGAGGGTCTAACTGACGATGATTATGAT
ATGTATTATGAAATATGGCAGCAATTCGATCCAGATGGCACACAGTACATTCGCTATGAT
CAATTATCAGAGTTCTTAGATGTGCTCGAGCCACCGCTTCAAATACATAAACCAAATAAA
TATAAGATAATATCAATGGACATACCAATATGTCGTGGTGACATGATGTTCTGTGTGGAC
ATTTTGGATGCACTAACAAAAGATTTCTTCGCTCGTAAAGGCAATCCCATTGAGGAAACG
GGTGAAATTGAGGGCATTAATCAGCGACCTGATGAAATCGGTTATGAACCCGTATCATCG
ACACTATGGCGTCAACGCGAGGAGTACTGCGCACGACTTATACAGCATGCTTGGCGCAAG
CATAAACAGCACAAGGGAGACGATCACGATGGAACGGGTGATGAGAATGAGACGGGTGAT
GAGCACGAAGGTGGCGCTAGCGGAGCTGGCTTAGGTAGTTCACATTCACATAATGATGAG
ATTATGGGGGGTGAGGGTGGTTTAGGTAGACGTTCTTTATCCAATAATAACTCAAAAGAT
AAGATCAATAATTATAATAATAATATTAATAATAATAATATAAATAATAATGGCAAGACC
TCACCGAGAGATTCCGTAGGTAGCACTAGTGAGAAATTGGGCCGTCAATCGGTCGTATTA
GTAGAGAGTGATGGCTTTGTCACAAAGAATGGACATCGTGTGGTGATTCATTCACATTCA
CGTTCGCCAAGCATAACATCGCGGACGGCTGAAGTTTGA
>g3894.t1 Gene=g3894 Length=2112
MSDDSSSLLEEERSLFRPFTRESLLAIEARIAEELEKQKELEKRRAEGEIRYDDEDEDEG
PQPDPTLEQGVPIPVRMQGNFPAELAATPLEDIDSFYSNQRTFVVVSKGRDIFRFSATNA
LWLLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPSSPLIESTEVIFTGIYTFE
SGVKVMARGFILQPFTYLRDAWNWLDFIVITLAYVTMGIDLGNLAALRTFRVLRALKTVA
IVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQKCIKRWDGSWGNF
SHELWHQFCKNSTNWYYGPDEPLDPPVCGNSSGAGQCEEDYVCLQGFGPNPNYGYTSFDT
FAWAFLSAFRLMTQDFWENLYQLVLRSAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYD
ELQKKAEEEEAAEEEALREAEEAAAARQAKIEAHAAAAAASAQAAMEPEQIAKSPSDFSC
HSYELFVGQEKGNDDNNKEKMSIRSEGLESVSEITRTAPTALASAKQARKVSTTSLSLPG
SPFNPRRGSRGSHQFTLRNRGRFVGVSSSNDRKPLVLQTYLDAQEHLPYADDSNAVTPMS
EENGAIIVPVYYANLGSRHSSYTSHQSRISYTSHGDLLGGMTKESRLRGRSRNHAIIQQQ
PTSASSYADTNHKGHREYSLQEMSQDCTDEAGKIKSSNPFIEEPAQSNAVVDMKDVMVLN
DIIEQAAGRHSRASEHGVSVYYFPTEEEDDEDGPTFKEKMIEVALKSIDIFCIWDCCSCW
LKFQEMVGWLVFDPFVELFITLCIVINTLFMALDHHNMNRDIEKILKTGNYFFTATFGIE
ATLKLVAMSPKFYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWP
TLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNVHKFRDGMPRWNFTD
FMHSFMIVFRVLCGEWIESMWDCMFVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGS
SSLSAPTADSETNKIAEAFNRISRFKKWVKQSILNCLKGLKNKVTNQISVQPSALAKRLP
CLSSENGGDELEISGDEILADGLIKKGKENQLEVAIGDGMEFTIHGDLKNKSKKKLMNNS
KMIGNSITHDNRLDELNHRGMSLQDDDTASIKSYGSHKNRPFKDESHKGSAETIDGEEKR
DVSKEDLGIDEDEEGEEEEEEVPHHGIIHAEEDEVIEESPADCFPEHVYQRFPFLAGDDD
APFWQGWANLRLKTFQLIENKYFETAVITMILLSSLALALEDVHLPDRPILQDILYYMDR
IFTVIFFIEMLIKWLALGFQVYFTNAWCWLDFVIVMVSLINFIASLCGAGGIQAFKTMRT
LRALRPLRAMSRMQGMRVVVNALVQAIPSIFNVLLVCLIFWLIFAIMGVQLFAGKYFKCV
DANGTTLDKEIIPDRNVCKAENYSWENSPMNFDHVGKAYLCLFQVATFKGWIQIMNDAID
SIDVDIQPLRETNIYMYLYFVFFIIFGSFFTLNLFIGVIIDNFNEQKKKAGGSLEMFMTE
DQKKYYNAMKKMGSKKPMKAIPRPRWRPQAIVFELVTNKKFDMIIMLFIGLNMLTMTLDH
YQQTEIFTLILDYLNMIFIAIFSTECLMKIFALRYHYFVEPWNLFDVVVVVLSILSLVLS
DLIEKYFVSPTLLRVVRVAKVGRVLRLVKGAKGIRTLLFALAMSLPALFNICLLLFLVMF
IFAIFGMSFFMHVKKKSGIDDVYNFETFGQSMILLFQMSTSAGWDGVLDGIINEDECDPP
NPEIGFPGNCGSATVGITFMLTYLVISFLIVINMYIAVILENYSQATEDVQEGLTDDDYD
MYYEIWQQFDPDGTQYIRYDQLSEFLDVLEPPLQIHKPNKYKIISMDIPICRGDMMFCVD
ILDALTKDFFARKGNPIEETGEIEGINQRPDEIGYEPVSSTLWRQREEYCARLIQHAWRK
HKQHKGDDHDGTGDENETGDEHEGGASGAGLGSSHSHNDEIMGGEGGLGRRSLSNNNSKD
KINNYNNNINNNNINNNGKTSPRDSVGSTSEKLGRQSVVLVESDGFVTKNGHRVVIHSHS
RSPSITSRTAEV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 69 | g3894.t1 | CDD | cd13433 | Na_channel_gate | 1541 | 1593 | 2.8082E-29 |
| 24 | g3894.t1 | Coils | Coil | Coil | 24 | 51 | - |
| 23 | g3894.t1 | Coils | Coil | Coil | 419 | 449 | - |
| 25 | g3894.t1 | Coils | Coil | Coil | 2035 | 2055 | - |
| 19 | g3894.t1 | Gene3D | G3DSA:1.20.120.350 | - | 134 | 243 | 4.4E-20 |
| 17 | g3894.t1 | Gene3D | G3DSA:1.10.287.70 | - | 341 | 416 | 8.7E-12 |
| 18 | g3894.t1 | Gene3D | G3DSA:1.20.120.350 | - | 785 | 898 | 5.3E-31 |
| 15 | g3894.t1 | Gene3D | G3DSA:1.10.287.70 | - | 900 | 1022 | 2.5E-18 |
| 20 | g3894.t1 | Gene3D | G3DSA:1.20.120.350 | - | 1270 | 1394 | 3.5E-28 |
| 21 | g3894.t1 | Gene3D | G3DSA:1.20.120.350 | - | 1590 | 1711 | 1.4E-37 |
| 16 | g3894.t1 | Gene3D | G3DSA:1.10.287.70 | - | 1713 | 1844 | 2.3E-20 |
| 22 | g3894.t1 | Gene3D | G3DSA:1.10.238.10 | - | 1845 | 1961 | 7.8E-36 |
| 90 | g3894.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 71 | - |
| 91 | g3894.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1174 | 1206 | - |
| 92 | g3894.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1174 | 1224 | - |
| 89 | g3894.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1980 | 2002 | - |
| 93 | g3894.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1980 | 2017 | - |
| 94 | g3894.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2040 | 2072 | - |
| 7 | g3894.t1 | PANTHER | PTHR10037:SF288 | SODIUM CHANNEL PROTEIN PARA | 99 | 2097 | 0.0 |
| 8 | g3894.t1 | PANTHER | PTHR10037 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM | 99 | 2097 | 0.0 |
| 9 | g3894.t1 | PRINTS | PR00170 | Voltage-gated Na+ channel alpha subunit signature | 1822 | 1841 | 1.5E-12 |
| 10 | g3894.t1 | PRINTS | PR00170 | Voltage-gated Na+ channel alpha subunit signature | 1857 | 1870 | 1.5E-12 |
| 5 | g3894.t1 | Pfam | PF00520 | Ion transport protein | 140 | 426 | 1.7E-69 |
| 1 | g3894.t1 | Pfam | PF11933 | Cytoplasmic domain of voltage-gated Na+ ion channel | 497 | 715 | 2.1E-44 |
| 3 | g3894.t1 | Pfam | PF00520 | Ion transport protein | 794 | 1019 | 5.7E-51 |
| 2 | g3894.t1 | Pfam | PF06512 | Sodium ion transport-associated | 1029 | 1276 | 1.8E-34 |
| 6 | g3894.t1 | Pfam | PF00520 | Ion transport protein | 1280 | 1550 | 9.3E-66 |
| 4 | g3894.t1 | Pfam | PF00520 | Ion transport protein | 1600 | 1850 | 1.2E-54 |
| 30 | g3894.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 132 | - |
| 50 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 133 | 160 | - |
| 47 | g3894.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 161 | 203 | - |
| 58 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 204 | 226 | - |
| 29 | g3894.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 227 | 237 | - |
| 66 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 238 | 256 | - |
| 46 | g3894.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 257 | 261 | - |
| 59 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 262 | 284 | - |
| 32 | g3894.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 285 | 393 | - |
| 51 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 394 | 419 | - |
| 41 | g3894.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 420 | 785 | - |
| 64 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 786 | 810 | - |
| 34 | g3894.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 811 | 830 | - |
| 63 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 831 | 854 | - |
| 43 | g3894.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 855 | 859 | - |
| 65 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 860 | 884 | - |
| 26 | g3894.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 885 | 914 | - |
| 49 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 915 | 938 | - |
| 45 | g3894.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 939 | 957 | - |
| 60 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 958 | 977 | - |
| 36 | g3894.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 978 | 988 | - |
| 61 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 989 | 1015 | - |
| 44 | g3894.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1016 | 1281 | - |
| 48 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1282 | 1300 | - |
| 35 | g3894.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1301 | 1320 | - |
| 67 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1321 | 1343 | - |
| 40 | g3894.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1344 | 1348 | - |
| 54 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1349 | 1375 | - |
| 33 | g3894.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1376 | 1395 | - |
| 56 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1396 | 1427 | - |
| 39 | g3894.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1428 | 1516 | - |
| 57 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1517 | 1540 | - |
| 28 | g3894.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1541 | 1602 | - |
| 68 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1603 | 1621 | - |
| 38 | g3894.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1622 | 1632 | - |
| 62 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1633 | 1652 | - |
| 27 | g3894.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1653 | 1663 | - |
| 55 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1664 | 1683 | - |
| 42 | g3894.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1684 | 1726 | - |
| 53 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1727 | 1750 | - |
| 31 | g3894.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1751 | 1820 | - |
| 52 | g3894.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1821 | 1840 | - |
| 37 | g3894.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1841 | 2112 | - |
| 95 | g3894.t1 | ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 1857 | 1892 | 9.688 |
| 13 | g3894.t1 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 140 | 419 | 1.73E-25 |
| 12 | g3894.t1 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 794 | 1018 | 2.04E-29 |
| 14 | g3894.t1 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 1281 | 1547 | 2.35E-40 |
| 11 | g3894.t1 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 1599 | 1845 | 1.8E-30 |
| 70 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 138 | 160 | - |
| 74 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 202 | 224 | - |
| 84 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 231 | 253 | - |
| 71 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 263 | 285 | - |
| 82 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 394 | 416 | - |
| 81 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 791 | 813 | - |
| 78 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 826 | 848 | - |
| 72 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 863 | 885 | - |
| 87 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 916 | 938 | - |
| 83 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 992 | 1014 | - |
| 88 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1321 | 1343 | - |
| 85 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1353 | 1375 | - |
| 75 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1410 | 1432 | - |
| 77 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1518 | 1540 | - |
| 80 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1604 | 1621 | - |
| 86 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1626 | 1648 | - |
| 76 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1661 | 1683 | - |
| 79 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1727 | 1749 | - |
| 73 | g3894.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1815 | 1837 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0006811 | ion transport | BP |
| GO:0005261 | cation channel activity | MF |
| GO:0005216 | ion channel activity | MF |
| GO:0005509 | calcium ion binding | MF |
| GO:0001518 | voltage-gated sodium channel complex | CC |
| GO:0005248 | voltage-gated sodium channel activity | MF |
| GO:0005886 | plasma membrane | CC |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
- This transcript has been annotated with K04834 (voltage-gated sodium channel type II alpha)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
