General information for g3894.t2

Gene loci information

Transcript annotation

This transcript has been annotated as Sodium channel protein para.

Parent gene

The parent gene g3894 is located on chr_3: 28649934..28682385 (- strand)

Gene structure

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome	Gene	Transcript	Category	ID	Start	End
chr_3	g3894	g3894.t2	isoform	g3894.t2	28649934	28682385
chr_3	g3894	g3894.t2	exon	g3894.t2.exon1	28649934	28650941
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS1	28649934	28650941
chr_3	g3894	g3894.t2	exon	g3894.t2.exon2	28651654	28651958
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS2	28651654	28651958
chr_3	g3894	g3894.t2	exon	g3894.t2.exon3	28652469	28652739
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS3	28652469	28652739
chr_3	g3894	g3894.t2	exon	g3894.t2.exon4	28653019	28653264
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS4	28653019	28653264
chr_3	g3894	g3894.t2	exon	g3894.t2.exon5	28653328	28653522
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS5	28653328	28653522
chr_3	g3894	g3894.t2	exon	g3894.t2.exon6	28653592	28653714
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS6	28653592	28653714
chr_3	g3894	g3894.t2	exon	g3894.t2.exon7	28654455	28654577
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS7	28654455	28654577
chr_3	g3894	g3894.t2	exon	g3894.t2.exon8	28655249	28655371
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS8	28655249	28655371
chr_3	g3894	g3894.t2	exon	g3894.t2.exon9	28655498	28655671
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS9	28655498	28655671
chr_3	g3894	g3894.t2	exon	g3894.t2.exon10	28655739	28655998
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS10	28655739	28655998
chr_3	g3894	g3894.t2	exon	g3894.t2.exon11	28656067	28656277
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS11	28656067	28656277
chr_3	g3894	g3894.t2	exon	g3894.t2.exon12	28656544	28656713
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS12	28656544	28656713
chr_3	g3894	g3894.t2	exon	g3894.t2.exon13	28657596	28657800
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS13	28657596	28657800
chr_3	g3894	g3894.t2	exon	g3894.t2.exon14	28657881	28658065
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS14	28657881	28658065
chr_3	g3894	g3894.t2	exon	g3894.t2.exon15	28658577	28658739
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS15	28658577	28658739
chr_3	g3894	g3894.t2	exon	g3894.t2.exon16	28659572	28659745
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS16	28659572	28659745
chr_3	g3894	g3894.t2	exon	g3894.t2.exon17	28659812	28660092
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS17	28659812	28660092
chr_3	g3894	g3894.t2	exon	g3894.t2.exon18	28662140	28662208
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS18	28662140	28662208
chr_3	g3894	g3894.t2	exon	g3894.t2.exon19	28662265	28662373
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS19	28662265	28662373
chr_3	g3894	g3894.t2	exon	g3894.t2.exon20	28662452	28662886
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS20	28662452	28662886
chr_3	g3894	g3894.t2	exon	g3894.t2.exon21	28664250	28664534
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS21	28664250	28664534
chr_3	g3894	g3894.t2	exon	g3894.t2.exon22	28665255	28665419
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS22	28665255	28665419
chr_3	g3894	g3894.t2	exon	g3894.t2.exon23	28665717	28665861
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS23	28665717	28665861
chr_3	g3894	g3894.t2	exon	g3894.t2.exon24	28665941	28666007
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS24	28665941	28666007
chr_3	g3894	g3894.t2	exon	g3894.t2.exon25	28666101	28666307
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS25	28666101	28666307
chr_3	g3894	g3894.t2	exon	g3894.t2.exon26	28666374	28666465
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS26	28666374	28666465
chr_3	g3894	g3894.t2	exon	g3894.t2.exon27	28667369	28667497
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS27	28667369	28667497
chr_3	g3894	g3894.t2	exon	g3894.t2.exon28	28667705	28667910
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS28	28667705	28667910
chr_3	g3894	g3894.t2	exon	g3894.t2.exon29	28667981	28668136
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS29	28667981	28668136
chr_3	g3894	g3894.t2	exon	g3894.t2.exon30	28682239	28682385
chr_3	g3894	g3894.t2	cds	g3894.t2.CDS30	28682239	28682385
chr_3	g3894	g3894.t2	TSS	g3894.t2	NA	NA
chr_3	g3894	g3894.t2	TTS	g3894.t2	NA	NA

Sequences

>g3894.t2 Gene=g3894 Length=6429
ATGTCCGACGACTCCAGTTCGTTACTCGAGGAAGAACGTAGCTTGTTCCGTCCCTTCACC
CGCGAATCACTTTTGGCTATTGAAGCTCGTATTGCAGAGGAATTAGAAAAACAAAAAGAA
CTCGAAAAGAGGAGAGCTGAGGGAGAGATACGATATGATGATGAGGATGAAGATGAAGGT
CCTCAACCAGATCCAACACTCGAGCAAGGTGTACCTATCCCTGTTCGAATGCAAGGCAAT
TTCCCCGCAGAACTGGCCGCCACGCCTCTCGAGGATATTGATTCATTTTATTCAAACCAA
AGAACCTTCGTAGTTGTAAGCAAAGGCAGAGATATTTTTCGTTTTTCTGCAACAAACGCA
TTATGGTTACTTGATCCGTTCAATCCAATTCGTCGCGTAGCTATTTATATTCTAGTTCAT
CCACTTTTTTCGTTATTCATTATTACGACTATCCTCACAAATTGTATATTAATGATAATG
CCGTCATCGCCCTTAATAGAATCAACAGAGGTGATATTCACCGGAATCTACACATTCGAA
TCAGGTGTTAAAGTTATGGCACGAGGTTTCATTTTACAACCGTTTACTTATCTTAGGGAT
GCATGGAATTGGTTGGACTTCATAGTTATAACATTAGCTTACGTAACTATGGGTATCGAT
TTGGGAAACTTAGCTGCATTGAGAACATTCAGGGTACTTCGTGCACTCAAAACAGTAGCT
ATCGTTCCGGGTTTGAAGACTATCGTCGGTGCTGTCATTGAGTCCGTGAAGAATTTGCGT
GATGTAATCATTTTGACTATGTTTTCACTCTCTGTCTTTGCACTCATGGGTCTGCAAATT
TACATGGGTGTACTGACGCAAAAATGCATAAAACGATGGGATGGCTCATGGGGAAATTTT
AGCCATGAGCTGTGGCATCAGTTCTGCAAAAATAGCACAAATTGGTATTATGGTCCCGAT
GAGCCACTTGATCCACCTGTCTGTGGCAATTCATCTGGTGCTGGGCAATGTGAGGAAGAT
TATGTCTGTTTGCAAGGATTTGGTCCAAATCCTAATTATGGTTACACCAGTTTTGATACA
TTCGCATGGGCTTTTCTATCTGCTTTCCGTCTTATGACACAGGATTTCTGGGAAAACTTA
TATCAATTGGTGTTACGCTCAGCTGGACCGTGGCACATGCTCTTCTTCATTGTGATTATC
TTCTTGGGTTCGTTTTACCTTGTAAATTTAATCTTGGCCATTGTCGCCATGTCGTACGAC
GAACTCCAGAAGAAGGCCGAGGAGGAAGAGGCCGCCGAGGAAGAAGCACTTAGGGAAGCT
GAAGAAGCCGCGGCAGCTCGACAAGCAAAAATCGAAGCTCACGCGGCGGCAGCAGCTGCC
TCAGCCCAAGCGGCAATGGAGCCGGAGCAAATTGCAAAAAGCCCATCGGACTTTTCATGT
CACTCATATGAACTGTTTGTGGGTCAGGAGAAAGGCAATGACGATAACAACAAAGAGAAA
ATGTCAATTAGAAGCGAAGGATTGGAGTCGGTGAGCGAAATCACAAGAACAGCACCAACA
GCTCTTGCTTCAGCTAAACAAGCACGAAAAGTTAGCACGACTTCACTTTCGCTTCCCGGT
TCGCCTTTCAATCCTCGTCGTGGCTCACGTGGTTCACATCAGTTCACATTACGAAATCGT
GGACGGTTTGTTGGCGTGTCATCGAGTAATGATCGAAAGCCATTAGTTCTACAAACATAC
CTAGATGCACAGGAACATCTTCCTTATGCAGACGACTCTAATGCTGTCACACCCATGTCT
GAAGAAAATGGTGCAATTATTGTTCCCGTTTATTATGCAAATTTGGGATCAAGACACTCG
TCATATACATCACATCAATCGCGAATATCGTATACATCTCATGGTGATTTGCTAGGTGGA
ATGACAAAAGAAAGTAGATTACGTGGACGATCGAGAAATCATGCCATAATTCAGCAACAG
CCAACGTCAGCTTCATCTTATGCAGATACCAATCATAAGGGACATCGAGAATATTCTCTA
CAAGAAATGTCTCAAGACTGTACGGATGAAGCAGGCAAAATTAAAAGTAGTAATCCATTT
ATTGAGGAGCCAGCTCAATCAAATGCTGTTGTAGATATGAAAGATGTGATGGTGCTTAAT
GATATCATAGAGCAAGCAGCTGGTCGTCATAGTCGAGCAAGTGAGCATGGAGTGTCTGTC
TACTATTTCCCAACAGAAGAAGAGGATGACGAAGATGGACCCACTTTCAAAGAGAAGATG
ATTGAAGTGGCGCTTAAGAGCATCGACATCTTTTGTATATGGGACTGCTGTTCATGTTGG
CTAAAATTCCAAGAGATGGTTGGATGGCTCGTCTTCGATCCATTCGTTGAGTTGTTTATT
ACACTTTGTATTGTCATCAATACACTGTTTATGGCACTTGATCATCACAATATGAATAGA
GATATTGAAAAAATTTTAAAGACTGGCAACTATTTTTTCACTGCAACCTTCGGCATTGAA
GCAACATTAAAACTTGTCGCAATGAGTCCAAAATTTTATTTCCAGGAAGGCTGGAATATT
TTTGATTTCATAATTGTAGCATTATCATTACTTGAATTAGGCTTAGAAGGTGTTCAAGGT
TTATCTGTATTACGTTCATTTAGATTGCTGCGTGTGTTCAAGTTAGCTAAATCATGGCCA
ACATTAAATCTTTTGATTTCGATTATGGGTCGAACGATGGGTGCATTGGGTAACCTAACG
TTCGTCTTGTGTATTATCATCTTCATATTTGCCGTAATGGGAATGCAACTATTTGGCAAA
AATTATCACGATAATGTGCATAAGTTTAGAGATGGAATGCCACGATGGAATTTTACGGAT
TTCATGCATTCATTTATGATAGTATTTCGAGTACTTTGCGGAGAATGGATCGAGAGTATG
TGGGACTGTATGTTCGTCGGTGACGTGTCTTGCATACCATTCTTCTTAGCTACAGTAGTA
ATAGGCAACTTAGTCGTTCTTAATCTTTTCTTAGCCTTGCTTTTGTCCAATTTTGGTTCA
TCGAGCTTATCAGCACCAACGGCCGATTCAGAAACGAATAAAATTGCGGAAGCATTCAAT
AGAATATCCCGATTTAAGAAATGGGTCAAGCAGAGTATATTAAATTGTCTGAAGGGACTG
AAAAATAAAGTAACGAATCAAATATCAGTACAGCCATCAGAAAATGGTGGTGATGAGCTA
GAAATCAGTGGCGATGAAATACTTGCGGATGGACTGATAAAGAAAGGAAAAGAAAATCAG
TTAGAAGTTGCGATAGGCGATGGCATGGAATTTACGATACATGGAGATTTAAAAAACAAA
TCAAAGAAAAAACTTATGAATAACTCAAAAATGATAGGAAATTCAATCACACACGATAAT
AGATTAGATGAGCTAAATCATAGAGGCATGTCCTTGCAGGACGATGACACTGCCAGTATT
AAATCATATGGAAGTCATAAAAATCGACCATTCAAAGATGAAAGTCATAAAGGAAGTGCT
GAAACGATAGATGGTGAAGAGAAACGTGATGTAAGCAAGGAGGATTTGGGAATTGATGAA
GATGAAGAAGGCGAAGAGGAAGAAGAAGAAGTACCACACCATGGCATAATTCACGCTGAA
GAGGATGAAGTCATTGAGGAATCACCAGCCGATTGCTTCCCCGAGCACGTTTATCAACGT
TTTCCATTTCTGGCTGGTGATGACGATGCTCCATTCTGGCAAGGATGGGCCAATTTGCGC
TTGAAAACTTTCCAATTGATTGAGAACAAATATTTCGAGACAGCTGTAATTACGATGATC
TTGCTCAGTAGTTTAGCTTTGGCTTTAGAAGATGTTCATCTTCCGGATAGACCAATATTA
CAAGATATATTATATTACATGGATCGAATATTCACCGTGATATTTTTCATAGAAATGTTA
ATTAAATGGTTAGCTTTAGGTTTTCAAGTGTATTTCACGAACGCTTGGTGTTGGCTTGAT
TTTGTTATCGTCATGCTCTCGCTCATAAATTTGGGAGCGATTATGGCCGGTGCGGCTGAT
ATTCCAGCATTTCGTTCCATGCGAACATTGAGAGCCTTAAGACCACTTCGTGCTGTATCT
CGATGGGAAGGCATGAGAGTATCCCTCATCAACTTCATTGCTTCACTCTGTGGAGCTGGT
GGTATTCAAGCTTTCAAAACAATGCGTACGCTAAGGGCACTCAGACCTCTTCGTGCCATG
TCGCGTATGCAAGGAATGAGGGTTGTCGTCAATGCATTGGTACAAGCGATACCGTCCATC
TTCAATGTACTTTTAGTTTGTTTGATATTTTGGCTTATATTTGCAATTATGGGCGTACAA
CTTTTTGCCGGTAAATACTTTAAGTGCGTCGATGCTAACGGAACAACTTTGGATAAAGAA
ATTATACCAGATCGTAATGTATGTAAAGCTGAAAATTACTCATGGGAAAATTCACCAATG
AATTTCGATCACGTGGGCAAAGCATATTTGTGCCTATTTCAAGTAGCAACATTTAAGGGT
TGGATACAAATAATGAATGATGCAATCGATTCAATAGATGTGGATATTCAACCTTTGCGT
GAAACTAACATCTATATGTATCTCTACTTTGTATTCTTCATCATCTTTGGGTCATTCTTT
ACGTTAAATCTCTTCATTGGTGTCATCATTGATAACTTCAACGAGCAAAAGAAGAAGGCT
GGTGGATCACTCGAGATGTTCATGACAGAAGATCAGAAAAAATACTACAATGCCATGAAA
AAAATGGGTTCAAAGAAACCGATGAAAGCCATTCCGAGACCAAGATGGCGTCCTCAAGCA
ATAGTTTTTGAATTAGTTACAAATAAGAAATTCGACATGATTATTATGTTATTCATTGGT
CTGAATATGTTAACAATGACACTTGATCACTATCAACAAACCGAGATCTTCACACTCATT
CTCGATTATTTGAACATGATATTCATCGCCATATTTAGTACCGAGTGTTTGATGAAAATT
TTCGCACTTAGATATCATTATTTCGTTGAACCATGGAATTTGTTTGATGTTGTCGTGGTA
GTACTTTCCATATTAAGTTTGGTATTGAGCGATTTAATTGAAAAGTATTTTGTGTCACCG
ACATTATTGCGTGTTGTACGTGTAGCAAAAGTTGGACGTGTGCTACGTCTCGTCAAAGGA
GCAAAGGGAATTCGAACGTTACTTTTCGCCTTGGCTATGTCATTGCCAGCCTTGTTCAAT
ATCTGTCTACTGCTATTCTTAGTCATGTTTATCTTTGCCATATTCGGTATGTCATTCTTT
ATGCACGTCAAGAAGAAGAGTGGCATCGATGATGTCTACAATTTTGAAACGTTCGGACAG
AGTATGATTTTACTGTTTCAAATGTCGACATCAGCTGGATGGGATGGTGTATTAGATGGT
ATAATCAATGAAGACGAATGCGATCCACCAAATCCAGAGATCGGTTTTCCTGGCAATTGC
GGTTCAGCTACCGTTGGCATAACTTTTATGTTAACATATCTTGTTATTAGCTTCTTAATT
GTGATCAACATGTACATCGCTGTGATTTTGGAAAATTACTCGCAGGCGACAGAAGATGTG
CAAGAGGGTCTAACTGACGATGATTATGATATGTATTATGAAATATGGCAGCAATTCGAT
CCAGATGGCACACAGTACATTCGCTATGATCAATTATCAGAGTTCTTAGATGTGCTCGAG
CCACCGCTTCAAATACATAAACCAAATAAATATAAGATAATATCAATGGACATACCAATA
TGTCGTGGTGACATGATGTTCTGTGTGGACATTTTGGATGCACTAACAAAAGATTTCTTC
GCTCGTAAAGGCAATCCCATTGAGGAAACGGGTGAAATTGAGGGCATTAATCAGCGACCT
GATGAAATCGGTTATGAACCCGTATCATCGACACTATGGCGTCAACGCGAGGAGTACTGC
GCACGACTTATACAGCATGCTTGGCGCAAGCATAAACAGCACAAGGGAGACGATCACGAT
GGAACGGGTGATGAGAATGAGACGGGTGATGAGCACGAAGGTGGCGCTAGCGGAGCTGGC
TTAGGTAGTTCACATTCACATAATGATGAGATTATGGGGGGTGAGGGTGGTTTAGGTAGA
CGTTCTTTATCCAATAATAACTCAAAAGATAAGATCAATAATTATAATAATAATATTAAT
AATAATAATATAAATAATAATGGCAAGACCTCACCGAGAGATTCCGTAGGTAGCACTAGT
GAGAAATTGGGCCGTCAATCGGTCGTATTAGTAGAGAGTGATGGCTTTGTCACAAAGAAT
GGACATCGTGTGGTGATTCATTCACATTCACGTTCGCCAAGCATAACATCGCGGACGGCT
GAAGTTTGA

>g3894.t2 Gene=g3894 Length=2142
MSDDSSSLLEEERSLFRPFTRESLLAIEARIAEELEKQKELEKRRAEGEIRYDDEDEDEG
PQPDPTLEQGVPIPVRMQGNFPAELAATPLEDIDSFYSNQRTFVVVSKGRDIFRFSATNA
LWLLDPFNPIRRVAIYILVHPLFSLFIITTILTNCILMIMPSSPLIESTEVIFTGIYTFE
SGVKVMARGFILQPFTYLRDAWNWLDFIVITLAYVTMGIDLGNLAALRTFRVLRALKTVA
IVPGLKTIVGAVIESVKNLRDVIILTMFSLSVFALMGLQIYMGVLTQKCIKRWDGSWGNF
SHELWHQFCKNSTNWYYGPDEPLDPPVCGNSSGAGQCEEDYVCLQGFGPNPNYGYTSFDT
FAWAFLSAFRLMTQDFWENLYQLVLRSAGPWHMLFFIVIIFLGSFYLVNLILAIVAMSYD
ELQKKAEEEEAAEEEALREAEEAAAARQAKIEAHAAAAAASAQAAMEPEQIAKSPSDFSC
HSYELFVGQEKGNDDNNKEKMSIRSEGLESVSEITRTAPTALASAKQARKVSTTSLSLPG
SPFNPRRGSRGSHQFTLRNRGRFVGVSSSNDRKPLVLQTYLDAQEHLPYADDSNAVTPMS
EENGAIIVPVYYANLGSRHSSYTSHQSRISYTSHGDLLGGMTKESRLRGRSRNHAIIQQQ
PTSASSYADTNHKGHREYSLQEMSQDCTDEAGKIKSSNPFIEEPAQSNAVVDMKDVMVLN
DIIEQAAGRHSRASEHGVSVYYFPTEEEDDEDGPTFKEKMIEVALKSIDIFCIWDCCSCW
LKFQEMVGWLVFDPFVELFITLCIVINTLFMALDHHNMNRDIEKILKTGNYFFTATFGIE
ATLKLVAMSPKFYFQEGWNIFDFIIVALSLLELGLEGVQGLSVLRSFRLLRVFKLAKSWP
TLNLLISIMGRTMGALGNLTFVLCIIIFIFAVMGMQLFGKNYHDNVHKFRDGMPRWNFTD
FMHSFMIVFRVLCGEWIESMWDCMFVGDVSCIPFFLATVVIGNLVVLNLFLALLLSNFGS
SSLSAPTADSETNKIAEAFNRISRFKKWVKQSILNCLKGLKNKVTNQISVQPSENGGDEL
EISGDEILADGLIKKGKENQLEVAIGDGMEFTIHGDLKNKSKKKLMNNSKMIGNSITHDN
RLDELNHRGMSLQDDDTASIKSYGSHKNRPFKDESHKGSAETIDGEEKRDVSKEDLGIDE
DEEGEEEEEEVPHHGIIHAEEDEVIEESPADCFPEHVYQRFPFLAGDDDAPFWQGWANLR
LKTFQLIENKYFETAVITMILLSSLALALEDVHLPDRPILQDILYYMDRIFTVIFFIEML
IKWLALGFQVYFTNAWCWLDFVIVMLSLINLGAIMAGAADIPAFRSMRTLRALRPLRAVS
RWEGMRVSLINFIASLCGAGGIQAFKTMRTLRALRPLRAMSRMQGMRVVVNALVQAIPSI
FNVLLVCLIFWLIFAIMGVQLFAGKYFKCVDANGTTLDKEIIPDRNVCKAENYSWENSPM
NFDHVGKAYLCLFQVATFKGWIQIMNDAIDSIDVDIQPLRETNIYMYLYFVFFIIFGSFF
TLNLFIGVIIDNFNEQKKKAGGSLEMFMTEDQKKYYNAMKKMGSKKPMKAIPRPRWRPQA
IVFELVTNKKFDMIIMLFIGLNMLTMTLDHYQQTEIFTLILDYLNMIFIAIFSTECLMKI
FALRYHYFVEPWNLFDVVVVVLSILSLVLSDLIEKYFVSPTLLRVVRVAKVGRVLRLVKG
AKGIRTLLFALAMSLPALFNICLLLFLVMFIFAIFGMSFFMHVKKKSGIDDVYNFETFGQ
SMILLFQMSTSAGWDGVLDGIINEDECDPPNPEIGFPGNCGSATVGITFMLTYLVISFLI
VINMYIAVILENYSQATEDVQEGLTDDDYDMYYEIWQQFDPDGTQYIRYDQLSEFLDVLE
PPLQIHKPNKYKIISMDIPICRGDMMFCVDILDALTKDFFARKGNPIEETGEIEGINQRP
DEIGYEPVSSTLWRQREEYCARLIQHAWRKHKQHKGDDHDGTGDENETGDEHEGGASGAG
LGSSHSHNDEIMGGEGGLGRRSLSNNNSKDKINNYNNNINNNNINNNGKTSPRDSVGSTS
EKLGRQSVVLVESDGFVTKNGHRVVIHSHSRSPSITSRTAEV

Protein features from InterProScan

	Transcript	Database	ID	Name	Start	End	E.value
78	g3894.t2	CDD	cd13433	Na_channel_gate	1571	1623	2.58418E-29
30	g3894.t2	Coils	Coil	Coil	24	51	-
28	g3894.t2	Coils	Coil	Coil	419	449	-
29	g3894.t2	Coils	Coil	Coil	2065	2085	-
27	g3894.t2	Coils	Coil	Coil	2142	2142	-
25	g3894.t2	Gene3D	G3DSA:1.20.120.350	-	134	243	4.5E-20
21	g3894.t2	Gene3D	G3DSA:1.10.287.70	-	341	416	8.8E-12
24	g3894.t2	Gene3D	G3DSA:1.20.120.350	-	785	898	5.4E-31
19	g3894.t2	Gene3D	G3DSA:1.10.287.70	-	900	1022	2.5E-18
23	g3894.t2	Gene3D	G3DSA:1.20.120.350	-	1261	1381	4.4E-28
22	g3894.t2	Gene3D	G3DSA:1.20.120.350	-	1620	1741	1.4E-37
20	g3894.t2	Gene3D	G3DSA:1.10.287.70	-	1743	1874	2.3E-20
26	g3894.t2	Gene3D	G3DSA:1.10.238.10	-	1875	1991	7.9E-36
100	g3894.t2	MobiDBLite	mobidb-lite	consensus disorder prediction	38	71	-
102	g3894.t2	MobiDBLite	mobidb-lite	consensus disorder prediction	1163	1195	-
103	g3894.t2	MobiDBLite	mobidb-lite	consensus disorder prediction	1163	1213	-
99	g3894.t2	MobiDBLite	mobidb-lite	consensus disorder prediction	2010	2032	-
101	g3894.t2	MobiDBLite	mobidb-lite	consensus disorder prediction	2010	2047	-
98	g3894.t2	MobiDBLite	mobidb-lite	consensus disorder prediction	2070	2102	-
9	g3894.t2	PANTHER	PTHR10037:SF288	SODIUM CHANNEL PROTEIN PARA	99	1387	0.0
11	g3894.t2	PANTHER	PTHR10037	VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM	99	1387	0.0
8	g3894.t2	PANTHER	PTHR10037:SF288	SODIUM CHANNEL PROTEIN PARA	1387	2127	0.0
10	g3894.t2	PANTHER	PTHR10037	VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM	1387	2127	0.0
13	g3894.t2	PRINTS	PR00170	Voltage-gated Na+ channel alpha subunit signature	1852	1871	1.5E-12
12	g3894.t2	PRINTS	PR00170	Voltage-gated Na+ channel alpha subunit signature	1887	1900	1.5E-12
7	g3894.t2	Pfam	PF00520	Ion transport protein	140	426	1.7E-69
1	g3894.t2	Pfam	PF11933	Cytoplasmic domain of voltage-gated Na+ ion channel	497	715	2.1E-44
5	g3894.t2	Pfam	PF00520	Ion transport protein	794	1019	5.8E-51
2	g3894.t2	Pfam	PF06512	Sodium ion transport-associated	1029	1265	2.8E-34
4	g3894.t2	Pfam	PF00520	Ion transport protein	1269	1394	2.7E-26
6	g3894.t2	Pfam	PF00520	Ion transport protein	1400	1580	3.5E-44
3	g3894.t2	Pfam	PF00520	Ion transport protein	1630	1880	1.2E-54
36	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	1	132	-
57	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	133	160	-
53	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	161	203	-
63	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	204	226	-
33	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	227	237	-
77	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	238	256	-
52	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	257	261	-
64	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	262	284	-
38	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	285	393	-
58	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	394	419	-
45	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	420	785	-
74	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	786	810	-
40	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	811	830	-
72	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	831	854	-
46	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	855	859	-
76	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	860	884	-
32	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	885	914	-
56	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	915	938	-
48	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	939	957	-
67	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	958	977	-
42	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	978	988	-
68	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	989	1015	-
54	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	1016	1270	-
70	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1271	1289	-
34	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	1290	1309	-
61	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1310	1332	-
49	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	1333	1337	-
60	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1338	1364	-
35	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	1365	1384	-
59	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1385	1405	-
43	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	1406	1439	-
75	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1440	1463	-
37	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	1464	1546	-
62	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1547	1570	-
50	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	1571	1632	-
66	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1633	1651	-
31	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	1652	1662	-
55	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1663	1682	-
51	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	1683	1693	-
69	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1694	1713	-
41	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	1714	1733	-
73	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1734	1752	-
44	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	1753	1757	-
71	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1758	1780	-
39	g3894.t2	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.	1781	1850	-
65	g3894.t2	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.	1851	1870	-
47	g3894.t2	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.	1871	2142	-
104	g3894.t2	ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	1887	1922	9.688
17	g3894.t2	SUPERFAMILY	SSF81324	Voltage-gated potassium channels	140	419	1.8E-25
16	g3894.t2	SUPERFAMILY	SSF81324	Voltage-gated potassium channels	794	1018	7.61E-30
15	g3894.t2	SUPERFAMILY	SSF81324	Voltage-gated potassium channels	1270	1394	5.49E-17
18	g3894.t2	SUPERFAMILY	SSF81324	Voltage-gated potassium channels	1389	1577	2.59E-21
14	g3894.t2	SUPERFAMILY	SSF81324	Voltage-gated potassium channels	1629	1875	1.88E-30
79	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	138	160	-
83	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	202	224	-
96	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	231	253	-
80	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	263	285	-
92	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	394	416	-
90	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	791	813	-
86	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	826	848	-
82	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	863	885	-
97	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	916	938	-
95	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	992	1014	-
88	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	1310	1332	-
87	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	1342	1364	-
93	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	1387	1405	-
85	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	1440	1462	-
91	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	1548	1570	-
81	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	1656	1678	-
94	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	1691	1713	-
84	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	1757	1779	-
89	g3894.t2	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.	1845	1867	-

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID	TERM	ONTOLOGY
GO:0016020	membrane	CC
GO:0055085	transmembrane transport	BP
GO:0006811	ion transport	BP
GO:0005261	cation channel activity	MF
GO:0005216	ion channel activity	MF
GO:0005509	calcium ion binding	MF
GO:0001518	voltage-gated sodium channel complex	CC
GO:0005248	voltage-gated sodium channel activity	MF
GO:0005886	plasma membrane	CC
GO:0006814	sodium ion transport	BP

KEGG

Orthology

This transcript has been annotated with K04834 (voltage-gated sodium channel type II alpha)

Pathway

This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.