Gene loci information

Transcript annotation

  • This transcript has been annotated as 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase epsilon-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3905 g3905.t1 isoform g3905.t1 28736399 28745380
chr_3 g3905 g3905.t1 exon g3905.t1.exon1 28736399 28738943
chr_3 g3905 g3905.t1 cds g3905.t1.CDS1 28736399 28738943
chr_3 g3905 g3905.t1 exon g3905.t1.exon2 28739046 28739200
chr_3 g3905 g3905.t1 cds g3905.t1.CDS2 28739046 28739200
chr_3 g3905 g3905.t1 exon g3905.t1.exon3 28739396 28739857
chr_3 g3905 g3905.t1 cds g3905.t1.CDS3 28739396 28739857
chr_3 g3905 g3905.t1 exon g3905.t1.exon4 28739925 28740187
chr_3 g3905 g3905.t1 cds g3905.t1.CDS4 28739925 28740187
chr_3 g3905 g3905.t1 exon g3905.t1.exon5 28740277 28740413
chr_3 g3905 g3905.t1 cds g3905.t1.CDS5 28740277 28740413
chr_3 g3905 g3905.t1 exon g3905.t1.exon6 28740470 28740933
chr_3 g3905 g3905.t1 cds g3905.t1.CDS6 28740470 28740933
chr_3 g3905 g3905.t1 exon g3905.t1.exon7 28741012 28741162
chr_3 g3905 g3905.t1 cds g3905.t1.CDS7 28741012 28741162
chr_3 g3905 g3905.t1 exon g3905.t1.exon8 28741279 28741414
chr_3 g3905 g3905.t1 cds g3905.t1.CDS8 28741279 28741414
chr_3 g3905 g3905.t1 exon g3905.t1.exon9 28741500 28741803
chr_3 g3905 g3905.t1 cds g3905.t1.CDS9 28741500 28741803
chr_3 g3905 g3905.t1 exon g3905.t1.exon10 28741994 28742180
chr_3 g3905 g3905.t1 cds g3905.t1.CDS10 28741994 28742180
chr_3 g3905 g3905.t1 exon g3905.t1.exon11 28742255 28742391
chr_3 g3905 g3905.t1 cds g3905.t1.CDS11 28742255 28742391
chr_3 g3905 g3905.t1 exon g3905.t1.exon12 28742490 28742733
chr_3 g3905 g3905.t1 cds g3905.t1.CDS12 28742490 28742733
chr_3 g3905 g3905.t1 exon g3905.t1.exon13 28743192 28743445
chr_3 g3905 g3905.t1 cds g3905.t1.CDS13 28743192 28743445
chr_3 g3905 g3905.t1 exon g3905.t1.exon14 28743860 28743993
chr_3 g3905 g3905.t1 cds g3905.t1.CDS14 28743860 28743993
chr_3 g3905 g3905.t1 exon g3905.t1.exon15 28745137 28745380
chr_3 g3905 g3905.t1 cds g3905.t1.CDS15 28745137 28745380
chr_3 g3905 g3905.t1 TSS g3905.t1 NA NA
chr_3 g3905 g3905.t1 TTS g3905.t1 NA NA

Sequences

>g3905.t1 Gene=g3905 Length=5817
ATGCGTGAAGCCTTCCCTCCTTGTCTTCCACCAATCACAAACAACAATAGTTCTGGAATT
GAAAATAATAATCACAAGGAGTATATCAATAAAAATCACCACAATCATAACTCACATACG
ACATCAACACTCGCTAACAATCATTGTCTTAAAGGAAAAAATTTAAATATTGATCGAAAC
AATGAAAATTCCAGAGATATATCTTTACACGAAACAGAAAAGATATGTTTTGATTCTGAT
GAAGCGCAAAGCCTCATAGCATCTCTAGTGTCCACACCTCCCTTCTCGAGTGATTTGGAG
GAGTTACAAAACATCTTGCATTTCCCTGAGGAGGTGGCGCTTCGTTTAACAGAGGCCGAA
TATCAGTTATATTATCAGACTTCAGTTGCTGATTTTATTATCGAGTCAATTTATGATTTA
CAAGGGAAGGTTAACGATGAGCGTGTAAATTCACCAATAAAAAATCTTAGAAAACGCTTC
GATGATGTCAGTTCGTGGACAACATACATTGTACTGTCACAACTTTTACCGGATGAACGT
CGTGCTGCATTTGGTTGTTTGTTACGAGTGGCAATATCATGTTGGAACATTGGCAATTTT
ATAGGAGCAAAAGAAATCATCACGGGTCTTAGATTTCTTCAGAACAAATCGCTTTGGTCG
TCAATTACGGAGAACAAGAGGATATCCTGCTACGACTTTCTGTGCTCTGCTTTCGATTCT
GCGGTCTACGAAACGAACCTTGCCCGTGCAATTGAAATTCCAACATGTCGTGTCATACCA
TATTTTAAATTTTATCTCGAAAAATTGAAAATCGCCTTATCATCGTCAAAATCATTTTCA
TTCACATCGGGCTCGATTGAAGAGATTTGTGCGAAGCTGAAAAAACGTGAAAAGATTCCT
GATATCGAATGTTTGGAACAAATGGAAGTCATCAAGAGTGAAATTGACTTATTTTTAGAG
CATCATCATGCATTGTGTCAACAAACATCGCCTAGTTTATACGATTATTTGAGACAAGCA
TCGAATACACCTAGACAATTAAACAATGAATTGAATCAAACATTACACGAGGTTGATGAG
GATTACGAATTAGAAATTGGAAATTATAACCCAGTACAAACGTTATTTAATGATCATGGC
ATTAGCTTAATTTCATTATCGTCTACCGACTACAATAAAATAGACCATCATTTATTGCAA
ATATTACATCACGGAACAACTGCTGTTTTATGGGAGCCTGATACCCAAACAGGCTCATCA
TATGTTTATTTTCGATTAGAACGATGCTGCTCGATAGTCTCATGGCAACGACCGGCATGG
CGTCGCATAAAATCTCAGATGGACTTTAATGTCGCAATTAATCCAGAGGAAAATGTTGTG
CCACGAACTGTGACAAAGCCAGTATATAATATGAACGATATTGATGGAATTTTCCATACA
CTCGATGAAGGTATTCTCGATTTGGCCACCGTTAAAGATATCTCGATGGGATCACGAAAT
CAAGATTATAATCAAGATATTTTGGCCGCTGGAAGACGATATGGATTAACGCATGTCGAG
AGTTGTGTATCAATTTTATATGGAACTTCACTTAATGAAAATCGAATACTCTGCATCTTA
TGCCCTCCAATGTTAGCTAGATTATGGTATGTCGGTTTGACGTGCATGTTACGAGGTATC
AGAAAGCAAATTAGTCTTATTGATCGATCAATGCTGTGGCTTAAGGAGCTTTACATTCAA
CTTTTCTACGAGAATGGTGGATGTGAGCCGTTAGCATCTGACGCAATACGAGCATTCGGT
GGCACAGATTATTCATTCTTATCGACGACAACTTCAACGCCCGATTCGATACATAGTGTT
AAGAAGGATATAGGACAACAACAGCAACAGACATCATCACAATCATCATCAAATCAACAA
TCAACACCCATAACATCATCAACAAATATGAAGAAAAAGAAATCAATGGTGAATTTATTT
ACATGCGGACAACAATCGCAAACTTCTCCCCCATCTTCTACAAACAATGCAACAATAACA
TCAATTCAAAATCAGCAACATCAATATGAGCAACAACAAGTTACTTCGAACCAACAGCAG
CAGCATCAACAATCAATGTCAACTCCTTCATCTCTTTGTGATACAACAACAACAAATTCA
TCCATTTCAACTAAACATTATAATGCATTTAACAACATATCATTTGATACTAATTTAGAT
TTTCTATCGTTTGTCTCATTGTACCGATCATTTAGTTTAATTGCAAGAAAAGATTTACGT
GATATATTTGACCAATTATCAGTAACTAGAAAGAGTAAAATAACCTTAAATAGTGATAAA
AGCCGAAGTGCACCTGAACTATTCCATGAGAAACCTGAGAAAAGAAAAATAGGACTACTA
ACGCGTAACAATTCGCTCGACTTTGAGCTCTCGCAATCGAAATATTCACAAAAGAAATTA
TTTCATACGCTCATAAGGAATTTTGGTTATTGTGGCAATTACAGTCCATTAACGGCAATG
CAAATTTCATCTGGCAATCCATCAATGTCAAATAATAGCTCCTCCCAAGTGATTACGCTT
GATACGTTTAAGAAGTTTTTAGAGACGCGTCAGATTGAATCGAAGAGTGATAGTGAGATT
AGGATGATTATTGAGCGTCACGAACCAGATCAGAATTTACGCTCCGAAAATTTATTGAGC
TTTGAAGGTTTTGCACGCTATTTGATGGATAAGGACAATTATGCGATGACGAAGACAGTT
TGTCCCACAAAAATGGCAGATCAAATGAATATGAACTTGCCATTATCGCATTATTTTATT
GCCACGTCGCACAATACGTATCTTACAGGTCATCAGTTGAAGGGCGAGAGCTCAGTTGAG
TTATATAGTCAGGTATTGCTAACGGGTTGTCGTTGCGTTGAATTAGATTGCTGGGACGGA
GATGAAGGATATCCGATTATATATCATGGACATACATTCACATCGAAAATTCCATTTCGT
GCGGTTGTTGATGCAATTAACAAGTCAGCATTCGTTGCCAGTCCATATCCTGTAATATTG
AGTATTGAAAATCACTGCTCAATACAACAACAAATTAAAATGGCACAAATATTTCAGACC
ACATTTGGTGATAAATTGGTGACAAAATTTATGTTTGATATCGATTATACGGACGAACCA
TATTTGCCTACACCTGAGCAATTAAAACACAAAATAATCATCAAGAATAAAAAAATATTG
GTTGATGTTCCAGTTGGAATTAGCTCGCCTAGGAGTCCATACATGCGACATCAGAGCAAT
TTAAGTGGGCGTGCTAGTTCAATTATATCGAACAGCTCTGCTGGGTCGTTGAACGAAGAC
TTTGAAGATAGCGATTACGAAGATGACGATGACATAGATAATTTTGATGATAAGACTTAC
AATATTTGGGGCTCATCGGTTGATGACAAGTATACACGACACAGCATCACTTCGTTCACC
GCAAATGTTCGAAAACTTGAAATGGAAGAGAGATCGAAGAAGCGTAGTAATCAAATTGCA
CGTGAACTTTCAGACCTTGTGACATATGTACAGGCTATAAAGTTTCGTGGTCTCAATCCA
TGGATTCACTACAACATGAATCAACGAAATGGCACATCAACGCCGTCTGCATCTGGTGCG
CTCTCGACCTCATCTACCACAATTGCCCTAACTAGCAACGTGACTTCCACAACCAACACA
TCGTCATCAAGTGTCGCAGGTTCAAATATCAAAATATTTACAACGGGTGATACGAATGCT
GAGACTGAATCAAATACGTCTGGTGAGCAAGAGACATGCTCATCATCAGCATCCGCATCA
ACACAATATGGCAGTGGTAACAATGTCACAGTTCACAAAAAATATCCACATGCGAATGTA
AATCATCCATGTTATCAATGTGCGTCGATCAATGAAGCAAATGCTAAAAAGATTTGTCGT
AAACATCCATTGGCAGTCATTGCACACACTGAAACTCAGCTAATACGTTCTTATCCGGCT
GGTTTACGAATCGATTCTTCAAATTTCAATCCTGTCTTCTTTTGGAGCTTTGGCATGCAA
ATGGTTGCACTCAACTATCAAACTGAAGATCTCCCTATGCACATCAATCGTGCAATGTTT
GAGCAATCCAATAACTATGGCTACGTGTGTAAGCCAAGTATCATGTGGAATCGATCTCAT
CTCATGTATCGACGCTTTAATCCACTCGAGAAAGAATTTGATGGATTGCATACGACACAA
ATTGTTATAAATATTGTCAGTGGACAATATTTGAACCAAAATAACTTGTTATCTAGTCCC
TTTATTGAAATAGAAATAATTGGAATACCAAGTGATTGTTGTAAACGTAAAACTAAAGCA
ATAATGCGCAATGCATTCAATCCAATTTGGAATGAGACCTTTTATTTTCGTGTTAATTTC
ATCGATTTGGCCTTCATACGTTTTGCTGTCTATGATTCAGATGGTGGATTTATGCTAGCA
CAGCGAGTCATGTCTATCAAATCATTAAGATCTGGTTATCGACATGTCTGTTTAAGATCA
TCAACTAATTTGCTACTAAACATGGCATCACTTTTTATTTATTCTCGCATTGAAGAAGAA
ACAATTGATAGTTGCTATGATGAAACAATGATGGATCGAGCAAAAGCTGCAACTTTGTCA
TTAACAGAATCAAAATTATTGAATCAACTTAATGATAATGATAAAGGTAAACGTAAGACT
TTTTTCCTTACAGTATATGGGGTTACACCTGATGAGCCTTATACGATTTTAAAAGTCATT
CAAGAGAGCACAACAAAAGATGTACTACAACAAGCGTTAATGAAAGGTGGAATTCCACTT
GAGAATTTGAATGATTTTGTATTGGTTGAAGAAGTGTTTCCATCTTGGGAGAAAAAAGAT
CGTGCACAGCCACCAAAACAACGAATGCTTGATGCCGTTGAAAAACCTTTACAATCGCAA
GCTAAATGGAAAGGTGAAGGTCGATTTATATTAAAGAAAATAGGCGATGATCCTTCGAGT
AGAGCGTGGCTTAGCACTGTAAGAAGAGTTGGTGCAGCATTAGATAGACAATCAGACTAC
ATGACAACAGCATTTGCTAAAGAGAATCTCAAAAATTCACCATGTTCTGGTACGAATAAT
TCAAGTTCAAGTGATTTGGCATTGATTGAAAATGTTGAACATTTTGTTGTGTGCATTTAC
AATGTGTCACCCGATATACCTTATGCCATGTTACGAGTTCCATTAAAAGCAACAGCTCAA
GATGTTCTTGCACAAGCATTACTAAAGGCAAGAAGATTTGACAATCCAAATAATTTTGTA
TTACTTGAGGAAATTCAACCAAATAATGCAAATACACCAGTTCATCAACGCATAATGCAA
CAAGATGAGAATGTATATAAAACACAAGCCAATTGGAAAACACTTGGTCGCTTTATCATT
CAAGAGAGACAATCGACACCATCAATATTGAGGAAGGTTAAATCGGTCGATAAGGGTAAA
GGTCTCAGCATATCTCGTCCATCAAAATTTCCCATACAGTCAATGCTCAGTGACCCAACG
ACATCACGTATTAAAGCAAAATCTGCTGACTCACATTCGGAGCGAAAAATAAAACACAAT
AAATATAGTCCGGATCAATTGGACTATTCTTATTCTACACATCATCATCATCATCATCGA
TCTCATTATTCAGAAGGTGAAACGCTCAGCGAAGAAGAATCGAAAGATGATTTTTTATCA
ACAATAACGCGACTCAAACGAATGTCTATGAAGAAAATAAAATCATGGAAAAATTGA

>g3905.t1 Gene=g3905 Length=1938
MREAFPPCLPPITNNNSSGIENNNHKEYINKNHHNHNSHTTSTLANNHCLKGKNLNIDRN
NENSRDISLHETEKICFDSDEAQSLIASLVSTPPFSSDLEELQNILHFPEEVALRLTEAE
YQLYYQTSVADFIIESIYDLQGKVNDERVNSPIKNLRKRFDDVSSWTTYIVLSQLLPDER
RAAFGCLLRVAISCWNIGNFIGAKEIITGLRFLQNKSLWSSITENKRISCYDFLCSAFDS
AVYETNLARAIEIPTCRVIPYFKFYLEKLKIALSSSKSFSFTSGSIEEICAKLKKREKIP
DIECLEQMEVIKSEIDLFLEHHHALCQQTSPSLYDYLRQASNTPRQLNNELNQTLHEVDE
DYELEIGNYNPVQTLFNDHGISLISLSSTDYNKIDHHLLQILHHGTTAVLWEPDTQTGSS
YVYFRLERCCSIVSWQRPAWRRIKSQMDFNVAINPEENVVPRTVTKPVYNMNDIDGIFHT
LDEGILDLATVKDISMGSRNQDYNQDILAAGRRYGLTHVESCVSILYGTSLNENRILCIL
CPPMLARLWYVGLTCMLRGIRKQISLIDRSMLWLKELYIQLFYENGGCEPLASDAIRAFG
GTDYSFLSTTTSTPDSIHSVKKDIGQQQQQTSSQSSSNQQSTPITSSTNMKKKKSMVNLF
TCGQQSQTSPPSSTNNATITSIQNQQHQYEQQQVTSNQQQQHQQSMSTPSSLCDTTTTNS
SISTKHYNAFNNISFDTNLDFLSFVSLYRSFSLIARKDLRDIFDQLSVTRKSKITLNSDK
SRSAPELFHEKPEKRKIGLLTRNNSLDFELSQSKYSQKKLFHTLIRNFGYCGNYSPLTAM
QISSGNPSMSNNSSSQVITLDTFKKFLETRQIESKSDSEIRMIIERHEPDQNLRSENLLS
FEGFARYLMDKDNYAMTKTVCPTKMADQMNMNLPLSHYFIATSHNTYLTGHQLKGESSVE
LYSQVLLTGCRCVELDCWDGDEGYPIIYHGHTFTSKIPFRAVVDAINKSAFVASPYPVIL
SIENHCSIQQQIKMAQIFQTTFGDKLVTKFMFDIDYTDEPYLPTPEQLKHKIIIKNKKIL
VDVPVGISSPRSPYMRHQSNLSGRASSIISNSSAGSLNEDFEDSDYEDDDDIDNFDDKTY
NIWGSSVDDKYTRHSITSFTANVRKLEMEERSKKRSNQIARELSDLVTYVQAIKFRGLNP
WIHYNMNQRNGTSTPSASGALSTSSTTIALTSNVTSTTNTSSSSVAGSNIKIFTTGDTNA
ETESNTSGEQETCSSSASASTQYGSGNNVTVHKKYPHANVNHPCYQCASINEANAKKICR
KHPLAVIAHTETQLIRSYPAGLRIDSSNFNPVFFWSFGMQMVALNYQTEDLPMHINRAMF
EQSNNYGYVCKPSIMWNRSHLMYRRFNPLEKEFDGLHTTQIVINIVSGQYLNQNNLLSSP
FIEIEIIGIPSDCCKRKTKAIMRNAFNPIWNETFYFRVNFIDLAFIRFAVYDSDGGFMLA
QRVMSIKSLRSGYRHVCLRSSTNLLLNMASLFIYSRIEEETIDSCYDETMMDRAKAATLS
LTESKLLNQLNDNDKGKRKTFFLTVYGVTPDEPYTILKVIQESTTKDVLQQALMKGGIPL
ENLNDFVLVEEVFPSWEKKDRAQPPKQRMLDAVEKPLQSQAKWKGEGRFILKKIGDDPSS
RAWLSTVRRVGAALDRQSDYMTTAFAKENLKNSPCSGTNNSSSSDLALIENVEHFVVCIY
NVSPDIPYAMLRVPLKATAQDVLAQALLKARRFDNPNNFVLLEEIQPNNANTPVHQRIMQ
QDENVYKTQANWKTLGRFIIQERQSTPSILRKVKSVDKGKGLSISRPSKFPIQSMLSDPT
TSRIKAKSADSHSERKIKHNKYSPDQLDYSYSTHHHHHHRSHYSEGETLSEEESKDDFLS
TITRLKRMSMKKIKSWKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
29 g3905.t1 CDD cd00275 C2_PLC_like 1423 1538 9.04531E-41
30 g3905.t1 CDD cd17114 RA_PLC-epsilon 1578 1673 9.06021E-43
26 g3905.t1 Gene3D G3DSA:1.10.840.10 Son of sevenless (Sos) protein Chain 94 358 4.5E-18
27 g3905.t1 Gene3D G3DSA:1.10.238.10 - 848 919 1.5E-10
25 g3905.t1 Gene3D G3DSA:3.20.20.190 Phosphatidylinositol (PI) phosphodiesterase 928 1122 5.2E-73
24 g3905.t1 Gene3D G3DSA:3.20.20.190 Phosphatidylinositol (PI) phosphodiesterase 1235 1410 4.6E-39
28 g3905.t1 Gene3D G3DSA:2.60.40.150 - 1412 1576 1.3E-41
22 g3905.t1 Gene3D G3DSA:3.10.20.90 - 1584 1681 3.1E-27
23 g3905.t1 Gene3D G3DSA:3.10.20.90 - 1735 1825 3.3E-27
38 g3905.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 20 -
42 g3905.t1 MobiDBLite mobidb-lite consensus disorder prediction 617 652 -
37 g3905.t1 MobiDBLite mobidb-lite consensus disorder prediction 683 714 -
40 g3905.t1 MobiDBLite mobidb-lite consensus disorder prediction 1257 1280 -
41 g3905.t1 MobiDBLite mobidb-lite consensus disorder prediction 1857 1883 -
39 g3905.t1 MobiDBLite mobidb-lite consensus disorder prediction 1865 1883 -
8 g3905.t1 PANTHER PTHR10336 PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 380 1821 1.9E-271
9 g3905.t1 PANTHER PTHR10336:SF6 1-PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE PHOSPHODIESTERASE EPSILON-1 380 1821 1.9E-271
15 g3905.t1 PRINTS PR00390 Phospholipase C signature 934 952 1.0E-43
14 g3905.t1 PRINTS PR00390 Phospholipase C signature 960 980 1.0E-43
12 g3905.t1 PRINTS PR00390 Phospholipase C signature 1061 1078 1.0E-43
11 g3905.t1 PRINTS PR00390 Phospholipase C signature 1334 1355 1.0E-43
13 g3905.t1 PRINTS PR00390 Phospholipase C signature 1355 1373 1.0E-43
10 g3905.t1 PRINTS PR00390 Phospholipase C signature 1504 1514 1.0E-43
7 g3905.t1 Pfam PF00617 RasGEF domain 111 271 9.1E-11
6 g3905.t1 Pfam PF09279 Phosphoinositide-specific phospholipase C, efhand-like 853 913 9.0E-9
1 g3905.t1 Pfam PF00388 Phosphatidylinositol-specific phospholipase C, X domain 931 1078 1.0E-62
3 g3905.t1 Pfam PF00387 Phosphatidylinositol-specific phospholipase C, Y domain 1299 1393 1.2E-32
2 g3905.t1 Pfam PF00168 C2 domain 1420 1495 8.1E-11
4 g3905.t1 Pfam PF00788 Ras association (RalGDS/AF-6) domain 1580 1673 8.2E-10
5 g3905.t1 Pfam PF00788 Ras association (RalGDS/AF-6) domain 1740 1824 2.6E-10
48 g3905.t1 ProSiteProfiles PS50009 Ras guanine-nucleotide exchange factors catalytic domain profile. 108 345 23.269
45 g3905.t1 ProSiteProfiles PS50007 Phosphatidylinositol-specific phospholipase X-box domain profile. 930 1077 55.764
44 g3905.t1 ProSiteProfiles PS50008 Phosphatidylinositol-specific phospholipase Y-box domain profile. 1305 1395 32.867
43 g3905.t1 ProSiteProfiles PS50004 C2 domain profile. 1410 1503 15.636
47 g3905.t1 ProSiteProfiles PS50200 Ras-associating (RA) domain profile. 1579 1676 16.38
46 g3905.t1 ProSiteProfiles PS50200 Ras-associating (RA) domain profile. 1733 1825 18.072
34 g3905.t1 SMART SM00147 RasGEF_3 104 372 2.8E-4
33 g3905.t1 SMART SM00148 plcx_3 929 1077 1.4E-84
32 g3905.t1 SMART SM00149 plcy_3 1277 1396 2.7E-37
31 g3905.t1 SMART SM00239 C2_3c 1420 1518 3.4E-15
36 g3905.t1 SMART SM00314 RA_5 1579 1676 1.2E-7
35 g3905.t1 SMART SM00314 RA_5 1733 1825 5.5E-13
16 g3905.t1 SUPERFAMILY SSF48366 Ras GEF 62 280 7.98E-15
21 g3905.t1 SUPERFAMILY SSF47473 EF-hand 731 916 1.36E-12
19 g3905.t1 SUPERFAMILY SSF51695 PLC-like phosphodiesterases 930 1397 2.69E-113
20 g3905.t1 SUPERFAMILY SSF49562 C2 domain (Calcium/lipid-binding domain, CaLB) 1420 1534 1.04E-23
18 g3905.t1 SUPERFAMILY SSF54236 Ubiquitin-like 1577 1683 4.91E-32
17 g3905.t1 SUPERFAMILY SSF54236 Ubiquitin-like 1732 1827 1.18E-25

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008081 phosphoric diester hydrolase activity MF
GO:0007165 signal transduction BP
GO:0004435 phosphatidylinositol phospholipase C activity MF
GO:0007264 small GTPase mediated signal transduction BP
GO:0035556 intracellular signal transduction BP
GO:0005085 guanyl-nucleotide exchange factor activity MF
GO:0006629 lipid metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values