Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Chymotrypsin BI.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3913 g3913.t5 TSS g3913.t5 28849717 28849717
chr_3 g3913 g3913.t5 isoform g3913.t5 28849749 28850879
chr_3 g3913 g3913.t5 exon g3913.t5.exon1 28849749 28849952
chr_3 g3913 g3913.t5 cds g3913.t5.CDS1 28849879 28849952
chr_3 g3913 g3913.t5 exon g3913.t5.exon2 28850033 28850091
chr_3 g3913 g3913.t5 cds g3913.t5.CDS2 28850033 28850091
chr_3 g3913 g3913.t5 exon g3913.t5.exon3 28850152 28850415
chr_3 g3913 g3913.t5 cds g3913.t5.CDS3 28850152 28850415
chr_3 g3913 g3913.t5 exon g3913.t5.exon4 28850485 28850661
chr_3 g3913 g3913.t5 cds g3913.t5.CDS4 28850485 28850661
chr_3 g3913 g3913.t5 exon g3913.t5.exon5 28850728 28850879
chr_3 g3913 g3913.t5 cds g3913.t5.CDS5 28850728 28850879
chr_3 g3913 g3913.t5 TTS g3913.t5 28850940 28850940

Sequences

>g3913.t5 Gene=g3913 Length=856
ATGAAATTTGTGGCTTTATTCTTGACAATTTTTGTTGCTTTTGCGACTGCAGAAATTGAC
AATCAAGTTGATTGGTCAAATGTCTCACCAATTTTTCAACTAATTAAGCAACGTTTAGAT
GAACGCAAAAATGAACCTCTTCAACCACCAAATCGAAGAATTGTCAATGGGCAAGAAGCA
GAACCACATCAATTCCCCTACCAAAACTGGCACTGGTTTGTGCGGTGGATCAGTCATTTC
AGCGACAGCTGCATTGACAGCTGCTCATTGTACATCAACCGGTGTAACTGGTTATCTTTT
GATTGCTGGTGCAGTAAATCGCGTGCAAATCGAGCCACAACAACAGAGACGTCAGGTACC
ATCTAGTGCTTTCGTTCCACATCCTCAATATGGCCCACTTCGTTTAGTTAATGATATTGC
TGTCATTCGTGTTGCAGAAGCATTTACTTTGAATAATGTAGTTCAAGCTATTGCTTTAGC
ATCAAATCCAAATGAACTTCATGTTGACGCTGTAGTGACTGCTTCAGGTTTTGGACGATA
TAGTGATAGCCATTCACGCACTTCAGAAGTCGTTTTGTTCACACGAAAGACTGTCATTTC
AAATGCTCAATGTTCACAGAGTTTCCCACTTTTGGTTGTTGATTCAACCATTTGTGCTGT
TGGAACTGCTGGAATTAATAATGCAGTTTGTAATGGTGATTCAGGTGGTCCATTGACTAT
TATTAGAAATAATGAATCATATCAAGTTGGTGTTGTTTCATTTGGTAGTCCACAAGGATG
TGAAACTGGAATGCCAGATGGATATGCTCGTGTTTCACACTTTTTCACATGGATTTCTCA
AACTGCTGGCATATAA

>g3913.t5 Gene=g3913 Length=241
MNLFNHQIEELSMGKKQNHINSPTKTGTGLCGGSVISATAALTAAHCTSTGVTGYLLIAG
AVNRVQIEPQQQRRQVPSSAFVPHPQYGPLRLVNDIAVIRVAEAFTLNNVVQAIALASNP
NELHVDAVVTASGFGRYSDSHSRTSEVVLFTRKTVISNAQCSQSFPLLVVDSTICAVGTA
GINNAVCNGDSGGPLTIIRNNESYQVGVVSFGSPQGCETGMPDGYARVSHFFTWISQTAG
I

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g3913.t5 CDD cd00190 Tryp_SPc 25 238 8.91112E-57
8 g3913.t5 Gene3D G3DSA:2.40.10.10 - 25 235 6.5E-49
9 g3913.t5 Gene3D G3DSA:2.40.10.10 - 114 229 6.5E-49
2 g3913.t5 PANTHER PTHR24250:SF56 SERINE PROTEASE P96 22 238 8.9E-68
3 g3913.t5 PANTHER PTHR24250 CHYMOTRYPSIN-RELATED 22 238 8.9E-68
4 g3913.t5 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 32 47 4.0E-10
6 g3913.t5 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 91 105 4.0E-10
5 g3913.t5 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 184 196 4.0E-10
1 g3913.t5 Pfam PF00089 Trypsin 28 235 8.8E-42
11 g3913.t5 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 42 47 -
12 g3913.t5 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 185 196 -
14 g3913.t5 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 11 240 22.286
13 g3913.t5 SMART SM00020 trypsin_2 10 235 6.2E-46
7 g3913.t5 SUPERFAMILY SSF50494 Trypsin-like serine proteases 26 239 8.56E-55

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed