General information for g3915.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3915 is located on chr_3: 28865141..28866173 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3915 | g3915.t2 | isoform | g3915.t2 | 28864470 | 28866173 |
| chr_3 | g3915 | g3915.t2 | exon | g3915.t2.exon1 | 28864470 | 28865152 |
| chr_3 | g3915 | g3915.t2 | cds | g3915.t2.CDS1 | 28864470 | 28865141 |
| chr_3 | g3915 | g3915.t2 | exon | g3915.t2.exon2 | 28865573 | 28866173 |
| chr_3 | g3915 | g3915.t2 | TSS | g3915.t2 | NA | NA |
| chr_3 | g3915 | g3915.t2 | TTS | g3915.t2 | NA | NA |
Sequences
>g3915.t2 Gene=g3915 Length=1284
TCTTTTAAAGTCACTTTTTTCGTGCTTTTTATTTTAATTTTTGATATTTGGTTAAATGAA
TGACAAATGCTGAATGTTTGCTGACAAAAACAAATAATTTTAAATTTCTTTTTTGTTGAT
TTTCACAAAGAAAATTTATAAAATCGAAATTTTTAGGACTTTATTTCGCTTTATATTTAT
ATTGATAAATTAGAGAGGTTGTCAAGGGAGTTGATAAATGAAATGAAAAAAAACTTGTAA
TTTTTGATATTTTTAAAATTCTTAAATTAAAGTTAATGTCAACATTTTATAAAACTTCAA
AACTTTCAAAATAAGTTCTTAAATCTCAAAAATAATAAAAAATTCCCAAAAAAATCTCAA
AATAAGTCAAAAAAAGAAAAATAATGAAAAATTTCCATAAAAGTTTTCATCGACCTTCAT
CATTTTGAGTTTGCAAGTGTCAGTCACAGTACGTCGCCTAAATCGTCACAAATTCAACTC
AAAAAATGTTCATAATGTTTTTAAATTTTATAAACTTTTAACCAATTAGAATCGTAAATT
TTACAATAGATCCCGTCTTCTTTATTCTATCACAACAGCTGAAAGTAAAATAATTGAAAA
CATGCGCAAAAAATGCCAGTTTCGGAAGTTTCAAATAGAATTTCAAGCTTAACTGATGAT
AATAACATTTATAAACAATTAAGCGAGAAGCAAAGAAATTGGAAAAAATCTTCCAGCTTT
GACGATAATTGTGTCAACAATCAATCAATATTGTGCTTATTTAATGAAGATCCTGAATTA
AGGTTCTTTAAATTAGATAAAAAGTTTAGAAAACAATTTTTATTTCAACAAGTTGAGTCA
AGAAAAAATAAGGAAAACGGAATTGATCGCGTGAAGAAAAGTAAAAAGAGAAAAATAAAA
ATTGATAAAAGTGAGCAAAGTGAGAAGCGAAATAAGCTCGAAATGTATGACTATCGTCAT
AATTCAACATTACTCAAGACGACCGAAAACAGTGGAAGTAATAATGACTTTGTGTCCTCA
TCAAAAAATGAAGAAGATGAGGAAAATATTATTAATGCATTCTATCAGCAACGATATTTA
GGTGGAAGTAATAATTCTATTGCGACATTATGCAATATTGGCAATTCATGCTATTTAAAT
TCTGTCATTTATACACTTCGATTTGCACCATATTTCCTTCATAAACTTCATCATCTTTGC
GATGATATGCACTTTGTGTACCAAAAAATTGGTCAAAATAAACTGAAAAGTTCTTCATTG
GGACGTAATGTTAGCGGTCTACAG
>g3915.t2 Gene=g3915 Length=224
MPVSEVSNRISSLTDDNNIYKQLSEKQRNWKKSSSFDDNCVNNQSILCLFNEDPELRFFK
LDKKFRKQFLFQQVESRKNKENGIDRVKKSKKRKIKIDKSEQSEKRNKLEMYDYRHNSTL
LKTTENSGSNNDFVSSSKNEEDEENIINAFYQQRYLGGSNNSIATLCNIGNSCYLNSVIY
TLRFAPYFLHKLHHLCDDMHFVYQKIGQNKLKSSSLGRNVSGLQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3915.t2 | Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 157 | 222 | 2.9E-5 |
| 4 | g3915.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 102 | - |
| 1 | g3915.t2 | PANTHER | PTHR24006:SF674 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 | 102 | 198 | 5.6E-14 |
| 2 | g3915.t2 | PANTHER | PTHR24006 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | 102 | 198 | 5.6E-14 |
| 3 | g3915.t2 | SUPERFAMILY | SSF54001 | Cysteine proteinases | 166 | 199 | 7.85E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
