Gene loci information

Transcript annotation

  • This transcript has been annotated as Elongation of very long chain fatty acids protein AAEL008004.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3955 g3955.t5 isoform g3955.t5 29254071 29257436
chr_3 g3955 g3955.t5 exon g3955.t5.exon1 29254071 29254296
chr_3 g3955 g3955.t5 exon g3955.t5.exon2 29255598 29255682
chr_3 g3955 g3955.t5 exon g3955.t5.exon3 29255789 29255983
chr_3 g3955 g3955.t5 cds g3955.t5.CDS1 29255975 29255983
chr_3 g3955 g3955.t5 exon g3955.t5.exon4 29256041 29256415
chr_3 g3955 g3955.t5 cds g3955.t5.CDS2 29256041 29256415
chr_3 g3955 g3955.t5 exon g3955.t5.exon5 29256668 29256901
chr_3 g3955 g3955.t5 cds g3955.t5.CDS3 29256668 29256901
chr_3 g3955 g3955.t5 exon g3955.t5.exon6 29256969 29257436
chr_3 g3955 g3955.t5 cds g3955.t5.CDS4 29256969 29257091
chr_3 g3955 g3955.t5 TTS g3955.t5 29257426 29257426
chr_3 g3955 g3955.t5 TSS g3955.t5 NA NA

Sequences

>g3955.t5 Gene=g3955 Length=1583
TGCATACATACAATTCGCAAAGTTGCAAGACCCATTTTGGAATGAAATAATTTAAACGAT
ATAGATAGATACAGTATGTATATGAATTTCGAGAGGGAAGGAATACGGTGTTTCGTAGTT
TTGTAAATTAAGCATTTTTTATTATATTAATAGCATTTTATGCTATTAGCACAATATTTA
TTAAAGAATAGTATCAATTTTAGAAATTCCTAATAGCGATATCTAACAATAAAATTTTTT
ACGTACAATCATGGCTCACTTATTAACAGACCTGTACGATTGGTACAATGACTTGATGGA
CAATCGTTCAGATTCTCGTGTCAAAGATTGGCCAATGATGCAGTCACCAATCCCAACATT
ACTGCTCTGCATGAGTTACGCATTTTTCTGTAAATCACTGGCTCCCCGCCTGATGAAAAA
TCGCAAACCATTTGATCTTAGAAAAACTCTAGTTGTATACAATCTGTTTCAAACAGTATT
CAGTGCATGGATATTTTATGAGGTGTTATTTACAAAGTGGTTGGCTGCGTGATTATAGCT
ATAGATGTCAACCAGTCGATTATTCGCCTAAAGGATTTAGAATGGCTGAAACATGCTGGT
GGTACTACATCTCCAAATTTACAGAGTTCTTCGATACATTTTTCTTCATACTGAGGAAAA
AATATCAACATGTTTCAACCCTTCATGTCATTCATCACGGTGTTATGCCATTCAGTGTAT
GGATGGGAATGAAGTTCGCTCCGGGCGGTCACAGTACCTTTTTTGCAATGCTCAATGCTT
TTGTACATATTGTCATGTATTTTTATTACATGCTGGCTGCAATGGGTCCACAAGTGCAGA
AATATTTATGGTGGAAGCGATATTTAACGGCGTTTCAAATGGTTCAATTTGTGGCCATTT
TCACACATCAGTTCCAATTATTATGGACAGAGTGCGATTATCCAAAAGGCTTCATGGTGT
GGATTGGTCTGCACGGCATCATGTTTCTCTTTCTTTTCTCAGATTTTTATAAACAGAGTT
ATATTAATAAGAAGGAAAAAGTTCGAGCTCTTAAAAAAGAGTCTGAAAATGGCAAATTAT
ATCTCAATGGAGATAGCAAAATTCATAGTTCTCTGTCAAATCATCAAGAAGAACATCTAA
ATGGAGGAACTTATCTCAATGGACACATAGAGAAGAATGGACAAATCATCACAAACGGTA
TCAATGCAACTAATGGTTCAATTAGATCAAGAAAATGACAAATTGATAAAATGTGTTCAT
AACATAAAGAAAAGAGATCAAGTGTAATATTTAATTACTTTAGAATTTAATGATCAAAAA
ATGACCATCGACAAACTGACCAATCCGAAGACAGCAGATGACTTTTCCGTCTTCAGTAAA
GTAATGAATAACAATCTATTTTAGCTATATATCAGAACTTTAACGAAAAAAAACAAATAT
GAGGGAAAAATATGTTTTTTTGGATATTTTATATATATTTTATTATTTTATTCTCCTTAC
CATTATCTATTTTTGAGTTTTTGCTTTAATTAAAACAATTTTGAATAAAAAAGAAGAATG
TTATACAAAAATTTCGAATAAAA

>g3955.t5 Gene=g3955 Length=246
MRCYLQSGWLRDYSYRCQPVDYSPKGFRMAETCWWYYISKFTEFFDTFFFILRKKYQHVS
TLHVIHHGVMPFSVWMGMKFAPGGHSTFFAMLNAFVHIVMYFYYMLAAMGPQVQKYLWWK
RYLTAFQMVQFVAIFTHQFQLLWTECDYPKGFMVWIGLHGIMFLFLFSDFYKQSYINKKE
KVRALKKESENGKLYLNGDSKIHSSLSNHQEEHLNGGTYLNGHIEKNGQIITNGINATNG
SIRSRK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g3955.t5 PANTHER PTHR11157 FATTY ACID ACYL TRANSFERASE-RELATED 7 196 4.9E-94
3 g3955.t5 PANTHER PTHR11157:SF151 ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN 7 196 4.9E-94
1 g3955.t5 Pfam PF01151 GNS1/SUR4 family 12 181 1.8E-48
12 g3955.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 33 -
15 g3955.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 34 52 -
8 g3955.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 53 63 -
18 g3955.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 64 82 -
11 g3955.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 83 87 -
17 g3955.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 88 110 -
10 g3955.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 111 121 -
14 g3955.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 122 140 -
13 g3955.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 141 151 -
16 g3955.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 152 171 -
9 g3955.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 172 246 -
6 g3955.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 59 78 -
7 g3955.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 88 110 -
5 g3955.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 122 141 -
4 g3955.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 151 168 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values