General information for g3978.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Myosin heavy chain 95F.
Parent gene
- The parent gene g3978 is located on chr_3: 29354185..29355636 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3978 | g3978.t2 | isoform | g3978.t2 | 29344937 | 29351846 |
| chr_3 | g3978 | g3978.t2 | exon | g3978.t2.exon1 | 29344937 | 29345229 |
| chr_3 | g3978 | g3978.t2 | TSS | g3978.t2 | 29344944 | 29344944 |
| chr_3 | g3978 | g3978.t2 | exon | g3978.t2.exon2 | 29348482 | 29348683 |
| chr_3 | g3978 | g3978.t2 | cds | g3978.t2.CDS1 | 29348497 | 29348683 |
| chr_3 | g3978 | g3978.t2 | exon | g3978.t2.exon3 | 29348892 | 29348965 |
| chr_3 | g3978 | g3978.t2 | cds | g3978.t2.CDS2 | 29348892 | 29348965 |
| chr_3 | g3978 | g3978.t2 | exon | g3978.t2.exon4 | 29349033 | 29349225 |
| chr_3 | g3978 | g3978.t2 | cds | g3978.t2.CDS3 | 29349033 | 29349225 |
| chr_3 | g3978 | g3978.t2 | exon | g3978.t2.exon5 | 29351502 | 29351846 |
| chr_3 | g3978 | g3978.t2 | cds | g3978.t2.CDS4 | 29351502 | 29351530 |
| chr_3 | g3978 | g3978.t2 | TTS | g3978.t2 | NA | NA |
Sequences
>g3978.t2 Gene=g3978 Length=1107
AATGAAGCAGTCGAGTTTGTGTTCTCTGTTGAGTAAGACGTCTTTTAAAAATTATCTGTG
TGTGTCTTAATAAATTTAATCCAATAAATGTAATTTTAAACAATATTGCAGACATTTTAT
AAGTATTTTGTGAAAATTATTAATGTGTTAACCTGTTCAAATAGCAAAATTTATACTGTG
ATACATGAAATTTTAAAGAAAACAAAATTCGGCAAAAAATAGAATTTTTTTCTCTACTGG
ATTAAAGCTGACTAACTTTACAAAAGAAAATAATTACATCCAAAAGAGAAGAGCTGCAGC
TGTAAATTATGCTCGATCTTGCCGACTTAGTGTGGGCACGCGATCCGAACGAAGGATATA
TTCAAGGCAAATTATCTGAACTTGGTGCTCATGAATATGAAATTATTCCTACGGAAAAAG
GTTACCAAAAGAGAAGCTGTAATATTGATGATATTTTTCCATCGTGTGAGAATAAATCTG
ATCATGATGACAATTGTGAACTTATGTTTTTAAATGAAGCAACTCTCTTAGACAATATTA
AGAACAGATATTATAAAGATAAAATCTATACATATGTTGCAAACATTTTGATTGCTGTAA
ATCCATATAAAGAAATCAAAGATCTTTATTCAAAAGCAACTATTAAGAGCTACAATGGAA
AATCAATTGGAGAAATGCCACCCCATGTATACGCAATTGCAGATAAAGCAATTAGAGACA
TGAGAGTATTAAAAGTATCTCAAAGTATTATTGTATCTGGAGAGCGGCGCAGGGAAGACC
GAGTCTACTAAATACTTGCTACGTTATTTGTGTGACTCGGTTGAAGCAGCAGGACAGATT
GAACAAAAAATTCTTGATTCAAATCCAATATTGGAAGCATTTGGAAATGCAAAAACTATA
AGAAACAATAATTCTTCGAGATTTGGGAAATTCATAGAAGTTCATTATGATACAAAGTAT
CAAGTCGTTGGCGGTTTTATTTCGCACTATTTGCTTGAGAAAAGTAGAATTTGTACACAA
AGTTTAGAGGAGAGAAATTATCATATTTTTTACCTTTTGTGTGCTGGAGCACCTCAAAGT
TTGCGTGATAAATTTCACATTGGTAAA
>g3978.t2 Gene=g3978 Length=160
MLDLADLVWARDPNEGYIQGKLSELGAHEYEIIPTEKGYQKRSCNIDDIFPSCENKSDHD
DNCELMFLNEATLLDNIKNRYYKDKIYTYVANILIAVNPYKEIKDLYSKATIKSYNGKSI
GEMPPHVYAIADKAIRDMRVLKVSQSIIVSGERRREDRVY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3978.t2 | Gene3D | G3DSA:3.40.850.10 | Kinesin | 7 | 154 | 0.000 |
| 2 | g3978.t2 | PANTHER | PTHR13140:SF794 | MYOSIN VIA | 8 | 152 | 0.000 |
| 3 | g3978.t2 | PANTHER | PTHR13140 | MYOSIN | 8 | 152 | 0.000 |
| 1 | g3978.t2 | Pfam | PF00063 | Myosin head (motor domain) | 59 | 152 | 0.000 |
| 6 | g3978.t2 | ProSiteProfiles | PS51456 | Myosin motor domain profile. | 57 | 160 | 40.564 |
| 4 | g3978.t2 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 56 | 152 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016459 | myosin complex | CC |
| GO:0003774 | cytoskeletal motor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
