General information for g3987.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable glucosamine 6-phosphate N-acetyltransferase.
Parent gene
- The parent gene g3987 is located on chr_3: 29393566..29394733 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3987 | g3987.t1 | TTS | g3987.t1 | 29393101 | 29393101 |
| chr_3 | g3987 | g3987.t1 | isoform | g3987.t1 | 29393566 | 29394733 |
| chr_3 | g3987 | g3987.t1 | exon | g3987.t1.exon1 | 29393566 | 29393921 |
| chr_3 | g3987 | g3987.t1 | cds | g3987.t1.CDS1 | 29393566 | 29393921 |
| chr_3 | g3987 | g3987.t1 | exon | g3987.t1.exon2 | 29393983 | 29394064 |
| chr_3 | g3987 | g3987.t1 | cds | g3987.t1.CDS2 | 29393983 | 29394064 |
| chr_3 | g3987 | g3987.t1 | exon | g3987.t1.exon3 | 29394145 | 29394276 |
| chr_3 | g3987 | g3987.t1 | cds | g3987.t1.CDS3 | 29394145 | 29394276 |
| chr_3 | g3987 | g3987.t1 | exon | g3987.t1.exon4 | 29394716 | 29394733 |
| chr_3 | g3987 | g3987.t1 | cds | g3987.t1.CDS4 | 29394716 | 29394733 |
| chr_3 | g3987 | g3987.t1 | TSS | g3987.t1 | 29394832 | 29394832 |
Sequences
>g3987.t1 Gene=g3987 Length=588
ATGAGCAGTAATAAAGAGGAGCAAGAACTGTATCTGTATGATCCCTCATTATTATTGAAA
CTCGATTTCTATCGATCGCCTGCAAAATTCAATCCACCGATTACATGCGTTGCACCTGGT
GAACCATGGTTAAAAGTTCGACCACTCAAGAGCGGCGATTATCGTCGTGGCTTTCTACAA
ATTCTTTCTCAATTAACAAGTATTGGTGAAATTTCAGAGGTGCAGTTTCTAAATCGATTT
GCTGAAATGAGAGCAAAAGGTGATTACTATGTAACAGTAATTGAAGATTTGAGAAAGAAC
AAGATTATTGGTTCAGCAACATTGGTTATTGAAAGAAAATTTATTCATTCATGTGGTAAT
CGTGCTCATCTTGAGGATGTTGTTGTTGATGACACTTATCGTGGAAAACAATTAGGAAAA
TTAATTGTTGTTACAGTTACTTGTTTGGCCGAGTACTTAGGATGCTATAAAATGAGTCTC
GAATGTAAAGATAAACTAATTGCTTTTTATAGATCTATTGGTTATGTTGATGAACCAGGT
AATTCAAATTCTATGACTCTTCGGTACGATAAACAAGCTAACTTATGA
>g3987.t1 Gene=g3987 Length=195
MSSNKEEQELYLYDPSLLLKLDFYRSPAKFNPPITCVAPGEPWLKVRPLKSGDYRRGFLQ
ILSQLTSIGEISEVQFLNRFAEMRAKGDYYVTVIEDLRKNKIIGSATLVIERKFIHSCGN
RAHLEDVVVDDTYRGKQLGKLIVVTVTCLAEYLGCYKMSLECKDKLIAFYRSIGYVDEPG
NSNSMTLRYDKQANL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3987.t1 | CDD | cd04301 | NAT_SF | 93 | 161 | 0.0000303 |
| 5 | g3987.t1 | Gene3D | G3DSA:3.40.630.30 | - | 14 | 175 | 0.0000000 |
| 2 | g3987.t1 | PANTHER | PTHR13355:SF11 | GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE | 38 | 178 | 0.0000000 |
| 3 | g3987.t1 | PANTHER | PTHR13355 | GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE | 38 | 178 | 0.0000000 |
| 1 | g3987.t1 | Pfam | PF00583 | Acetyltransferase (GNAT) family | 80 | 175 | 0.0000000 |
| 6 | g3987.t1 | ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 44 | 195 | 12.6230000 |
| 4 | g3987.t1 | SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 45 | 180 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006048 | UDP-N-acetylglucosamine biosynthetic process | BP |
| GO:0008080 | N-acetyltransferase activity | MF |
| GO:0004343 | glucosamine 6-phosphate N-acetyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00621 (glucosamine-phosphate N-acetyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
