General information for g3987.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable glucosamine 6-phosphate N-acetyltransferase.
Parent gene
- The parent gene g3987 is located on chr_3: 29393566..29394733 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3987 | g3987.t6 | TTS | g3987.t6 | 29393101 | 29393101 |
| chr_3 | g3987 | g3987.t6 | isoform | g3987.t6 | 29393566 | 29394733 |
| chr_3 | g3987 | g3987.t6 | exon | g3987.t6.exon1 | 29393566 | 29393921 |
| chr_3 | g3987 | g3987.t6 | cds | g3987.t6.CDS1 | 29393566 | 29393907 |
| chr_3 | g3987 | g3987.t6 | exon | g3987.t6.exon2 | 29393983 | 29394064 |
| chr_3 | g3987 | g3987.t6 | exon | g3987.t6.exon3 | 29394177 | 29394276 |
| chr_3 | g3987 | g3987.t6 | exon | g3987.t6.exon4 | 29394716 | 29394733 |
| chr_3 | g3987 | g3987.t6 | TSS | g3987.t6 | 29394832 | 29394832 |
Sequences
>g3987.t6 Gene=g3987 Length=556
ATGAGCAGTAATAAAGAGGAGCAAGAACTGTATCTGTATGATCCCTCATTATTATTGAAA
CTCGATTTCTATCGATCGCCTGCAAAATTCAATCCACCGATTACATGCGTTGCACCTGAG
CGGCGATTATCGTCGTGGCTTTCTACAAATTCTTTCTCAATTAACAAGTATTGGTGAAAT
TTCAGAGGTGCAGTTTCTAAATCGATTTGCTGAAATGAGAGCAAAAGGTGATTACTATGT
AACAGTAATTGAAGATTTGAGAAAGAACAAGATTATTGGTTCAGCAACATTGGTTATTGA
AAGAAAATTTATTCATTCATGTGGTAATCGTGCTCATCTTGAGGATGTTGTTGTTGATGA
CACTTATCGTGGAAAACAATTAGGAAAATTAATTGTTGTTACAGTTACTTGTTTGGCCGA
GTACTTAGGATGCTATAAAATGAGTCTCGAATGTAAAGATAAACTAATTGCTTTTTATAG
ATCTATTGGTTATGTTGATGAACCAGGTAATTCAAATTCTATGACTCTTCGGTACGATAA
ACAAGCTAACTTATGA
>g3987.t6 Gene=g3987 Length=113
MRAKGDYYVTVIEDLRKNKIIGSATLVIERKFIHSCGNRAHLEDVVVDDTYRGKQLGKLI
VVTVTCLAEYLGCYKMSLECKDKLIAFYRSIGYVDEPGNSNSMTLRYDKQANL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g3987.t6 | CDD | cd04301 | NAT_SF | 11 | 79 | 0.0000429 |
| 5 | g3987.t6 | Gene3D | G3DSA:3.40.630.30 | - | 1 | 93 | 0.0000000 |
| 2 | g3987.t6 | PANTHER | PTHR13355:SF11 | GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE | 2 | 96 | 0.0000000 |
| 3 | g3987.t6 | PANTHER | PTHR13355 | GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE | 2 | 96 | 0.0000000 |
| 1 | g3987.t6 | Pfam | PF00583 | Acetyltransferase (GNAT) family | 11 | 93 | 0.0000000 |
| 6 | g3987.t6 | ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1 | 113 | 11.7570000 |
| 4 | g3987.t6 | SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 5 | 98 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006048 | UDP-N-acetylglucosamine biosynthetic process | BP |
| GO:0008080 | N-acetyltransferase activity | MF |
| GO:0004343 | glucosamine 6-phosphate N-acetyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed