Gene loci information

Transcript annotation

  • This transcript has been annotated as 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3991 g3991.t5 TTS g3991.t5 29399663 29399663
chr_3 g3991 g3991.t5 isoform g3991.t5 29399724 29400732
chr_3 g3991 g3991.t5 exon g3991.t5.exon1 29399724 29399803
chr_3 g3991 g3991.t5 cds g3991.t5.CDS1 29399802 29399803
chr_3 g3991 g3991.t5 exon g3991.t5.exon2 29399981 29400332
chr_3 g3991 g3991.t5 cds g3991.t5.CDS2 29399981 29400332
chr_3 g3991 g3991.t5 exon g3991.t5.exon3 29400387 29400508
chr_3 g3991 g3991.t5 cds g3991.t5.CDS3 29400387 29400508
chr_3 g3991 g3991.t5 exon g3991.t5.exon4 29400576 29400732
chr_3 g3991 g3991.t5 cds g3991.t5.CDS4 29400576 29400732
chr_3 g3991 g3991.t5 TSS g3991.t5 29400752 29400752

Sequences

>g3991.t5 Gene=g3991 Length=711
ATGTTTCGTAAATTAAATTTATTTAAAATTTATCGTACGTTTAATAAAAGACAATTATCA
TTGTCTATAAGATGCTGTAATAATTTTACTGAAGAATCTAAGGATTTTACTCATTTTGGT
TTTGAAACTGTCAAAACTGATGAAAAGACAGAAAAGGTACATCAAGTTTTTAAAGATGTT
GCTGAAAAGTATGATTTAATGAATGATGCAATGTCAATGGGTATTCATCGATTATGGAAA
GATATATTTCTAGAAAGACTCTATCCAACATTAGGAACTAAATTATTAGATGTTGCTGGT
GGAACAGGAGATATTGCGTTCAGATATATTAACTATATCAACAATTTAAATAAATCAAAT
CAAGATGCATATAGTAAAAAGAGCTCGGTTACAATTCTTGACATTAATCAGCATATGCTT
AATGTAGGAATGGAAAGAGCTGAAAAACTTGGTCACATATCAAATGAGACGCTTGATGTT
GAATGGGTGTGTGGAAATGCAGAAGAGTTGCCACTTGAAAGTGATCAATTTACAGCATAT
ACAATTGCATTCGGAATTAGAAATGTAACACATATAGACAAAGCATTAAGAGAAGCCTAT
AGAGTTCTTAAACCTGGTGGTCGTTTTATGTAAGAAGCTGGTTTTAAGCAAGTTACATAT
GAAAATTTAACTCTTGGAATATGTGCTATTCACTCCGGTTTCAAATTATAG

>g3991.t5 Gene=g3991 Length=210
MFRKLNLFKIYRTFNKRQLSLSIRCCNNFTEESKDFTHFGFETVKTDEKTEKVHQVFKDV
AEKYDLMNDAMSMGIHRLWKDIFLERLYPTLGTKLLDVAGGTGDIAFRYINYINNLNKSN
QDAYSKKSSVTILDINQHMLNVGMERAEKLGHISNETLDVEWVCGNAEELPLESDQFTAY
TIAFGIRNVTHIDKALREAYRVLKPGGRFM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g3991.t5 CDD cd02440 AdoMet_MTases 94 210 2.09575E-12
5 g3991.t5 Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 59 210 4.5E-46
2 g3991.t5 PANTHER PTHR43591 METHYLTRANSFERASE 8 210 1.5E-51
3 g3991.t5 PANTHER PTHR43591:SF61 2-METHOXY-6-POLYPRENYL-1,4-BENZOQUINOL METHYLASE, MITOCHONDRIAL 8 210 1.5E-51
1 g3991.t5 Pfam PF01209 ubiE/COQ5 methyltransferase family 46 209 6.6E-51
7 g3991.t5 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 64 79 -
8 g3991.t5 ProSiteProfiles PS51608 UbiE family SAM-binding methyltransferase profile. 48 210 62.855
4 g3991.t5 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 46 209 8.9E-30
9 g3991.t5 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 53 210 1.1E-48

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008168 methyltransferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed