General information for g4019.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Complex I intermediate-associated protein 30, mitochondrial.
Parent gene
- The parent gene g4019 is located on chr_3: 29547497..29548098 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4019 | g4019.t3 | TSS | g4019.t3 | 29547033 | 29547033 |
| chr_3 | g4019 | g4019.t3 | isoform | g4019.t3 | 29547106 | 29548098 |
| chr_3 | g4019 | g4019.t3 | exon | g4019.t3.exon1 | 29547106 | 29547199 |
| chr_3 | g4019 | g4019.t3 | cds | g4019.t3.CDS1 | 29547106 | 29547199 |
| chr_3 | g4019 | g4019.t3 | exon | g4019.t3.exon2 | 29547269 | 29547436 |
| chr_3 | g4019 | g4019.t3 | cds | g4019.t3.CDS2 | 29547269 | 29547436 |
| chr_3 | g4019 | g4019.t3 | exon | g4019.t3.exon3 | 29547494 | 29547715 |
| chr_3 | g4019 | g4019.t3 | cds | g4019.t3.CDS3 | 29547494 | 29547715 |
| chr_3 | g4019 | g4019.t3 | exon | g4019.t3.exon4 | 29547883 | 29548098 |
| chr_3 | g4019 | g4019.t3 | cds | g4019.t3.CDS4 | 29547883 | 29547917 |
| chr_3 | g4019 | g4019.t3 | TTS | g4019.t3 | 29548133 | 29548133 |
Sequences
>g4019.t3 Gene=g4019 Length=700
ATGTTAACAAGAAGTCTTAGGCATATAATAAAAAGCCGATGCTTTCATACAACTCCAGTG
AATACAACTTTTTGGGTAAAAAGCAAGAAACAAGGATATGAAGGTCCAAGAAAACTTTTA
ACGACTAAGATGATTTTAGATGGATTAAAAGATCTTAAAGAAGAGATCAAAATATGGAAA
GAAGAAATGCAAGAGAAATTAGAAAGCGATCCTATTTTAGTTTACCGACCGAATGAAATT
GATGTCTATTGTAGATTTACATCTCCTGAAGTTATAGATAACTGGATTGTTACTAGTGAC
AGTGATCATAATGAAGGACATAGCAAATGTACTTTTAAAACAAGTGCAGCTGGCTATGGC
TTATGGAGTGGAGTTGTAACTTCATTATTGCCTCAAGATGGTCGAATTAAAAAAGCCGGA
TATTGCAGTATAAGAAGCCAAAGACATACTAAATCATTTAGAAGAAATACATATTTCGAT
TGGATTTATGCTTGCATCGAATGGCGTTGTTCAGGATAAACAATATCCGATACCACTCAA
TAAAATAACTAGTTTTGGCTTATCAGTCTCCGGTAGGGGTGGGTTCGATGGTCCATTTAG
TTTAGAAATCGATTATATTGGACTTGAGTTTGATCCATCAAATAGTGAAGAGTTTGCTTA
TGAAATGTATAAGCAAGAAAAATATATTGTAGCCACATAA
>g4019.t3 Gene=g4019 Length=172
MLTRSLRHIIKSRCFHTTPVNTTFWVKSKKQGYEGPRKLLTTKMILDGLKDLKEEIKIWK
EEMQEKLESDPILVYRPNEIDVYCRFTSPEVIDNWIVTSDSDHNEGHSKCTFKTSAAGYG
LWSGVVTSLLPQDGRIKKAGYCSIRSQRHTKSFRRNTYFDWIYACIEWRCSG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g4019.t3 | Coils | Coil | Coil | 49 | 69 | - |
| 2 | g4019.t3 | PANTHER | PTHR13194:SF18 | COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30, MITOCHONDRIAL | 23 | 170 | 2.1E-16 |
| 3 | g4019.t3 | PANTHER | PTHR13194 | COMPLEX I INTERMEDIATE-ASSOCIATED PROTEIN 30 | 23 | 170 | 2.1E-16 |
| 1 | g4019.t3 | Pfam | PF08547 | Complex I intermediate-associated protein 30 (CIA30) | 85 | 155 | 1.4E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed