General information for g4032.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Segmentation protein fushi tarazu.
Parent gene
- The parent gene g4032 is located on chr_3: 29740937..29742429 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4032 | g4032.t1 | isoform | g4032.t1 | 29740937 | 29742429 |
| chr_3 | g4032 | g4032.t1 | exon | g4032.t1.exon1 | 29740937 | 29741183 |
| chr_3 | g4032 | g4032.t1 | cds | g4032.t1.CDS1 | 29740937 | 29741183 |
| chr_3 | g4032 | g4032.t1 | exon | g4032.t1.exon2 | 29741264 | 29741414 |
| chr_3 | g4032 | g4032.t1 | cds | g4032.t1.CDS2 | 29741264 | 29741414 |
| chr_3 | g4032 | g4032.t1 | exon | g4032.t1.exon3 | 29741574 | 29742429 |
| chr_3 | g4032 | g4032.t1 | cds | g4032.t1.CDS3 | 29741574 | 29742429 |
| chr_3 | g4032 | g4032.t1 | TSS | g4032.t1 | NA | NA |
| chr_3 | g4032 | g4032.t1 | TTS | g4032.t1 | NA | NA |
Sequences
>g4032.t1 Gene=g4032 Length=1254
ATGGCAGCAACACAATATTCAGACTATTACTATAATACAAATGGTAGCTATAACAATCAC
TATCATCATCATCATCAATCGCAGACTCATCAACAACCGCAACAGCAAGTTTATGGCTAC
AACAGTAACCAGTATGATTGCAAAACACATCTAAACGATGCTTACAATAATTACAATTAT
AATCTACCGTCAAATAATTATAATGATCAGTGGAACTCATACTATAATACAATTTCGACC
GCACAACATCAACAGCAATCACAATATGGATATGCAACAGCGACTAATAAGACCGACCTG
CAGCCGAATTTAAATTGCAATCAATTCGAAGCGAAAAATGATTTATATTATGGTCATCAT
TCGATGCAATATCAATCCAATGCAGCCACTCAATTAATTTCAAATGGAGAAACGCGTAAA
AGGAAAATAATCGATAATACATCCGCAGATGACTCTGACTCGCCAGCACTACGTGCACTT
TTATCACAGCCATCGAAGCGAGCAAAACACGTGAAATCGCCATATTTTTATCATCATCAC
GGTAGTATTTCACCAGCAAGTTCTACATCCGATAACTATTCAGCAATGCACTATCAAATG
CCCACATTGCCTGTTAATGCAGCAGTTGCTGAAGAGACAATTAATTTGTGTAATTATAAT
AATAAAGATGGATATGAGTCTTCCATTCATGAGGATCTTAATGTTAGTAAAGTCAATAGT
CCGATGAACAATAGTTTTATGACAACACCGCCATCATCACCAAAAGAATGCACCATTGCT
GCTAGTAATAATGGAAATAAGCAATGTCATGATGAAACTTCAAATTCAAGTGCTTTATGG
AATGAACAAAACGATGAAAAGAGCTCAAAGCGAACACGACAAACATATACTCGATATCAG
ACACTAGAATTAGAGAAGGAATTTAACCTCAATAAATACCTGACTCGCAGAAAGCGCATT
GAAATTTCGCACACTCTACAATTAACTGAGCGCCAAATCAAAATTTGGTTCCAAAATCGT
CGAATGAAATTTAAAAAAGACAGCTCGCTTCCAAATAACGATTTATTGTACACGGACGAG
CAACAAATCACTCAAAATTATCCAACTTATCAGCAACCAGCAAATATGCCTTCACATCAC
GATTATAATAATGGAATGATGGTAGCAACGAATGGCAATAATTCGTTGAATGGCTTGATG
AATATCAATCATGAACAGCAGCAAACGCATTTTGAATTATCGTCGTTTGTATGA
>g4032.t1 Gene=g4032 Length=417
MAATQYSDYYYNTNGSYNNHYHHHHQSQTHQQPQQQVYGYNSNQYDCKTHLNDAYNNYNY
NLPSNNYNDQWNSYYNTISTAQHQQQSQYGYATATNKTDLQPNLNCNQFEAKNDLYYGHH
SMQYQSNAATQLISNGETRKRKIIDNTSADDSDSPALRALLSQPSKRAKHVKSPYFYHHH
GSISPASSTSDNYSAMHYQMPTLPVNAAVAEETINLCNYNNKDGYESSIHEDLNVSKVNS
PMNNSFMTTPPSSPKECTIAASNNGNKQCHDETSNSSALWNEQNDEKSSKRTRQTYTRYQ
TLELEKEFNLNKYLTRRKRIEISHTLQLTERQIKIWFQNRRMKFKKDSSLPNNDLLYTDE
QQITQNYPTYQQPANMPSHHDYNNGMMVATNGNNSLNGLMNINHEQQQTHFELSSFV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g4032.t1 | CDD | cd00086 | homeodomain | 290 | 346 | 1.49091E-22 |
| 8 | g4032.t1 | Gene3D | G3DSA:1.10.10.60 | - | 266 | 348 | 3.6E-26 |
| 12 | g4032.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 294 | - |
| 13 | g4032.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 283 | - |
| 2 | g4032.t1 | PANTHER | PTHR45659 | HOMEOBOX PROTEIN HOX | 16 | 392 | 4.8E-40 |
| 3 | g4032.t1 | PANTHER | PTHR45659:SF4 | HOMEOTIC PROTEIN ANTENNAPEDIA | 16 | 392 | 4.8E-40 |
| 4 | g4032.t1 | PRINTS | PR00024 | Homeobox signature | 311 | 322 | 4.9E-8 |
| 6 | g4032.t1 | PRINTS | PR00024 | Homeobox signature | 326 | 336 | 4.9E-8 |
| 5 | g4032.t1 | PRINTS | PR00024 | Homeobox signature | 336 | 345 | 4.9E-8 |
| 1 | g4032.t1 | Pfam | PF00046 | Homeodomain | 290 | 346 | 1.4E-19 |
| 11 | g4032.t1 | ProSitePatterns | PS00027 | ‘Homeobox’ domain signature. | 322 | 345 | - |
| 14 | g4032.t1 | ProSiteProfiles | PS50071 | ‘Homeobox’ domain profile. | 287 | 347 | 20.892 |
| 10 | g4032.t1 | SMART | SM00389 | HOX_1 | 289 | 351 | 5.8E-24 |
| 7 | g4032.t1 | SUPERFAMILY | SSF46689 | Homeodomain-like | 275 | 346 | 1.5E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | MF |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
KEGG
Orthology
- This transcript has been annotated with K09305 (homeobox protein HoxA/B/C5)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed