General information for g4085.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Adiponectin receptor protein.
Parent gene
- The parent gene g4085 is located on chr_3: 30508439..30509086 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4085 | g4085.t10 | isoform | g4085.t10 | 30505984 | 30509086 |
| chr_3 | g4085 | g4085.t10 | exon | g4085.t10.exon1 | 30505984 | 30506615 |
| chr_3 | g4085 | g4085.t10 | cds | g4085.t10.CDS1 | 30506551 | 30506615 |
| chr_3 | g4085 | g4085.t10 | exon | g4085.t10.exon2 | 30506697 | 30506766 |
| chr_3 | g4085 | g4085.t10 | cds | g4085.t10.CDS2 | 30506697 | 30506766 |
| chr_3 | g4085 | g4085.t10 | exon | g4085.t10.exon3 | 30506845 | 30507043 |
| chr_3 | g4085 | g4085.t10 | cds | g4085.t10.CDS3 | 30506845 | 30507043 |
| chr_3 | g4085 | g4085.t10 | exon | g4085.t10.exon4 | 30507190 | 30507367 |
| chr_3 | g4085 | g4085.t10 | cds | g4085.t10.CDS4 | 30507190 | 30507341 |
| chr_3 | g4085 | g4085.t10 | exon | g4085.t10.exon5 | 30507459 | 30507657 |
| chr_3 | g4085 | g4085.t10 | exon | g4085.t10.exon6 | 30507731 | 30507980 |
| chr_3 | g4085 | g4085.t10 | exon | g4085.t10.exon7 | 30508859 | 30509086 |
| chr_3 | g4085 | g4085.t10 | TSS | g4085.t10 | NA | NA |
| chr_3 | g4085 | g4085.t10 | TTS | g4085.t10 | NA | NA |
Sequences
>g4085.t10 Gene=g4085 Length=1756
ATGTTTGCAAAAAAGAACCGTCCATCACTTTCATCATCATTGGACGTGCAATCAAATATA
GAAGATGAGGATTTTATTTTGAGAAAACGAATAAGAGATAATTCGCCAATTGATGATCGA
TTAGATGGCGATTCTGAAAGTTTAAATCTTGCAAGTGATGAGGAGGAAGACATTCCTGGT
TGTCCTTTGCCTTCGACACCAGAAGATAATGAGCTTTTGGAAGCTGAGAAGTTTTAAAGG
CAGGCGTACTCTCCGACGAAATTGATTTGGGAGCTCTTGCACATAATGCAGCAGAACAAG
CTGAAGTTTTTGTTAGAAAAGTATGGGAGGCTTCTTGGAAAGTTGTTCACTTTAAGAATT
TGCCGAAATGGTTGCAAGACAACGATTATCTTCATAGAGGTCATAGACCGCCTCTCGCAT
CATTTGGAGCTTGCTTCAAATCGATCTTTAGACTACATACCGAAACTGGAAACATTTGGA
CACACTTGCTTGGTTGTATAATGTTTATCGGCGCAACAATTTATTTTTTGTTGAGACCAG
CATGGCAGATTAATTTGGAAGAAAAAATGATTTTCTTGAGCTTTTTCATTGGTGCAATAG
TTTGCCTTGGATTCTCATTCGCTTTTCACACTGTATCATGTCACTCAGAAATGATTGGAA
AACTTTTTAGCAAGTGAATTATTGTGGAATTGCTCTCTTAATTATGGGGAGTTTTGTACC
TTGGCTTTATTACGGATTTTATTGCCATTATCAACCAAAAATCATTTATTTGACGATTGT
CATTGTCTTAGGATTCTTCTCAATTGTTACTTCTTTGTGGGACAAATTTTCTACGCCGCA
ATTGAGACCAGTGAGAGCGAGCGTTTTCATGGCTTTTGGCTTATCGGGAGTAATACCTGC
AATACACTATGTGTATATGGAAGGATGGTTCAATGAAATAAGCCGAAGTTCACTGGGATG
GCTCGTTTTGATGGGACTGCTTTATATCCTTGGTGCACTTTTTTATGCTTTGAGAATACC
CGAACGCTGGTTCCCTGGCAAATTCGATCTTTGGGGTCAATCTCATCAAATTTTTCATGT
ACTGGTTATTGTAGCTGCTTTAGTTCATTATCATGGAATATCAGAAATGGCTATGCATCG
AGTATCGCTCGGGGAATGTGATATTAAGCACACTGCAATTGTCTTATAAAGAATTAATAA
AGTAGTGGGTTTTTAAGCGAACTATGATGACGATGAGCAACAATGACAAAAGCTAGAAAG
AAGCTAAATAATAAATTCAATGTACTTTTTTTGGGAGAGTATAATTATATGATTATAGTA
AAAAACTAATTTCCTTATTAGCAAACACTATGCTGCACTCAAAAAAGAAAAGCATTCAGA
CATGTATATGAATTAATATTACCACATAGCCTACATATAAATATATTTTTCATAGCACAC
CTATGATCTTCTTAAAAGACTTTCCAACTTGTTTAAAAATTCGGTGGAATTGGTAGCAAG
TAAAATCAAATTTAATGTACATTGCCCATAAAGTTTTGTATTCTTTTGTGTTATATTACT
TAGTTTTAAAATTTATGTAAATAGCAATTGGAAAAAAAGTAAATTATTAAAACATGGGAA
ATCAATCAATATCTTTAGTTGTGTGAAAAACTTTATTAAATTCTAAAACAGATATCTATA
TCTTAAATGAAAAATGATCAATGCAAAAAAAAACTGTAAAAATAATTAAAATTCAATGAA
AATTTTAAAATAAAAT
>g4085.t10 Gene=g4085 Length=161
MGSFVPWLYYGFYCHYQPKIIYLTIVIVLGFFSIVTSLWDKFSTPQLRPVRASVFMAFGL
SGVIPAIHYVYMEGWFNEISRSSLGWLVLMGLLYILGALFYALRIPERWFPGKFDLWGQS
HQIFHVLVIVAALVHYHGISEMAMHRVSLGECDIKHTAIVL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4085.t10 | PANTHER | PTHR20855:SF28 | PROGESTIN AND ADIPOQ RECEPTOR FAMILY | 2 | 155 | 2.6E-59 |
| 3 | g4085.t10 | PANTHER | PTHR20855 | ADIPOR/PROGESTIN RECEPTOR-RELATED | 2 | 155 | 2.6E-59 |
| 1 | g4085.t10 | Pfam | PF03006 | Haemolysin-III related | 1 | 136 | 1.9E-45 |
| 12 | g4085.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 19 | - |
| 14 | g4085.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 40 | - |
| 8 | g4085.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 41 | 51 | - |
| 15 | g4085.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 52 | 71 | - |
| 10 | g4085.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 72 | 82 | - |
| 13 | g4085.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 83 | 103 | - |
| 9 | g4085.t10 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 104 | 122 | - |
| 16 | g4085.t10 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 123 | 139 | - |
| 11 | g4085.t10 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 140 | 161 | - |
| 6 | g4085.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 39 | - |
| 4 | g4085.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 54 | 76 | - |
| 7 | g4085.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 83 | 105 | - |
| 5 | g4085.t10 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 120 | 139 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
