General information for g4085.t14
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Adiponectin receptor protein.
Parent gene
- The parent gene g4085 is located on chr_3: 30508439..30509086 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4085 | g4085.t14 | isoform | g4085.t14 | 30507068 | 30509086 |
| chr_3 | g4085 | g4085.t14 | exon | g4085.t14.exon1 | 30507068 | 30507372 |
| chr_3 | g4085 | g4085.t14 | cds | g4085.t14.CDS1 | 30507186 | 30507372 |
| chr_3 | g4085 | g4085.t14 | exon | g4085.t14.exon2 | 30507463 | 30507657 |
| chr_3 | g4085 | g4085.t14 | cds | g4085.t14.CDS2 | 30507463 | 30507657 |
| chr_3 | g4085 | g4085.t14 | exon | g4085.t14.exon3 | 30507731 | 30507987 |
| chr_3 | g4085 | g4085.t14 | cds | g4085.t14.CDS3 | 30507731 | 30507987 |
| chr_3 | g4085 | g4085.t14 | exon | g4085.t14.exon4 | 30508859 | 30509086 |
| chr_3 | g4085 | g4085.t14 | cds | g4085.t14.CDS4 | 30508859 | 30509086 |
| chr_3 | g4085 | g4085.t14 | TSS | g4085.t14 | NA | NA |
| chr_3 | g4085 | g4085.t14 | TTS | g4085.t14 | NA | NA |
Sequences
>g4085.t14 Gene=g4085 Length=985
ATGTTTGCAAAAAAGAACCGTCCATCACTTTCATCATCATTGGACGTGCAATCAAATATA
GAAGATGAGGATTTTATTTTGAGAAAACGAATAAGAGATAATTCGCCAATTGATGATCGA
TTAGATGGCGATTCTGAAAGTTTAAATCTTGCAAGTGATGAGGAGGAAGACATTCCTGGT
TGTCCTTTGCCTTCGACACCAGAAGATAATGAGCTTTTGGAAGCTGAGATGACAGAAGTT
TTAAAGGCAGGCGTACTCTCCGACGAAATTGATTTGGGAGCTCTTGCACATAATGCAGCA
GAACAAGCTGAAGTTTTTGTTAGAAAAGTATGGGAGGCTTCTTGGAAAGTTGTTCACTTT
AAGAATTTGCCGAAATGGTTGCAAGACAACGATTATCTTCATAGAGGTCATAGACCGCCT
CTCGCATCATTTGGAGCTTGCTTCAAATCGATCTTTAGACTACATACCGAAACTGGAAAC
ATTTGGACACACTTGCTTGGTTGTATAATGTTTATCGGCGCAACAATTTATTTTTTGTTG
AGACCAGCATGGCAGATTAATTTGGAAGAAAAAATGATTTTCTTGAGCTTTTTCATTGGT
GCAATAGTTTGCCTTGGATTCTCATTCGCTTTTCACACTGTATCATGTCACTCAGAAATG
ATTGGAAAACTTTTTAGCAAATTAGATTATTGTGGAATTGCTCTCTTAATTATGGGGAGT
TTTGTACCTTGGCTTTATTACGGATTTTATTGCCATTATCAACCAAAAATCATTTATTTG
ACGATTGTCATTGTCTTAGGATTCTTCTCAATTGTTACTTCTTTGTGGGACAAATTTTCT
ACGCCGCAATTGAGACCAGTGAGGTAAATTTAGTAGTTTTGAGATAATAATATGATATGC
GATATTGTTAATGAACATTCACGTACATAAGCATTGTAATGTCATAAAATATTAATACAC
TTCTATATTAAACAAATAATAAAAT
>g4085.t14 Gene=g4085 Length=288
MFAKKNRPSLSSSLDVQSNIEDEDFILRKRIRDNSPIDDRLDGDSESLNLASDEEEDIPG
CPLPSTPEDNELLEAEMTEVLKAGVLSDEIDLGALAHNAAEQAEVFVRKVWEASWKVVHF
KNLPKWLQDNDYLHRGHRPPLASFGACFKSIFRLHTETGNIWTHLLGCIMFIGATIYFLL
RPAWQINLEEKMIFLSFFIGAIVCLGFSFAFHTVSCHSEMIGKLFSKLDYCGIALLIMGS
FVPWLYYGFYCHYQPKIIYLTIVIVLGFFSIVTSLWDKFSTPQLRPVR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4085.t14 | PANTHER | PTHR20855:SF28 | PROGESTIN AND ADIPOQ RECEPTOR FAMILY | 104 | 288 | 9.0E-88 |
| 3 | g4085.t14 | PANTHER | PTHR20855 | ADIPOR/PROGESTIN RECEPTOR-RELATED | 104 | 288 | 9.0E-88 |
| 1 | g4085.t14 | Pfam | PF03006 | Haemolysin-III related | 152 | 288 | 6.3E-41 |
| 10 | g4085.t14 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 160 | - |
| 16 | g4085.t14 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 161 | 180 | - |
| 9 | g4085.t14 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 181 | 191 | - |
| 15 | g4085.t14 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 192 | 212 | - |
| 11 | g4085.t14 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 213 | 231 | - |
| 14 | g4085.t14 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 232 | 250 | - |
| 8 | g4085.t14 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 251 | 256 | - |
| 13 | g4085.t14 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 257 | 276 | - |
| 12 | g4085.t14 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 277 | 288 | - |
| 7 | g4085.t14 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 158 | 180 | - |
| 5 | g4085.t14 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 193 | 215 | - |
| 6 | g4085.t14 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 230 | 250 | - |
| 4 | g4085.t14 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 257 | 276 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
