General information for g4085.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Adiponectin receptor protein.
Parent gene
- The parent gene g4085 is located on chr_3: 30508439..30509086 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4085 | g4085.t17 | isoform | g4085.t17 | 30507744 | 30509086 |
| chr_3 | g4085 | g4085.t17 | exon | g4085.t17.exon1 | 30507744 | 30507987 |
| chr_3 | g4085 | g4085.t17 | cds | g4085.t17.CDS1 | 30507745 | 30507987 |
| chr_3 | g4085 | g4085.t17 | exon | g4085.t17.exon2 | 30508859 | 30509086 |
| chr_3 | g4085 | g4085.t17 | cds | g4085.t17.CDS2 | 30508859 | 30509086 |
| chr_3 | g4085 | g4085.t17 | TSS | g4085.t17 | NA | NA |
| chr_3 | g4085 | g4085.t17 | TTS | g4085.t17 | NA | NA |
Sequences
>g4085.t17 Gene=g4085 Length=472
ATGTTTGCAAAAAAGAACCGTCCATCACTTTCATCATCATTGGACGTGCAATCAAATATA
GAAGATGAGGATTTTATTTTGAGAAAACGAATAAGAGATAATTCGCCAATTGATGATCGA
TTAGATGGCGATTCTGAAAGTTTAAATCTTGCAAGTGATGAGGAGGAAGACATTCCTGGT
TGTCCTTTGCCTTCGACACCAGAAGATAATGAGCTTTTGGAAGCTGAGATGACAGAAGTT
TTAAAGGCAGGCGTACTCTCCGACGAAATTGATTTGGGAGCTCTTGCACATAATGCAGCA
GAACAAGCTGAAGTTTTTGTTAGAAAAGTATGGGAGGCTTCTTGGAAAGTTGTTCACTTT
AAGAATTTGCCGAAATGGTTGCAAGACAACGATTATCTTCATAGAGGTCATAGACCGCCT
CTCGCATCATTTGGAGCTTGCTTCAAATCGATCTTTAGACTACATACCGAAA
>g4085.t17 Gene=g4085 Length=157
MFAKKNRPSLSSSLDVQSNIEDEDFILRKRIRDNSPIDDRLDGDSESLNLASDEEEDIPG
CPLPSTPEDNELLEAEMTEVLKAGVLSDEIDLGALAHNAAEQAEVFVRKVWEASWKVVHF
KNLPKWLQDNDYLHRGHRPPLASFGACFKSIFRLHTE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g4085.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 62 | - |
| 1 | g4085.t17 | PANTHER | PTHR20855:SF40 | ADIPONECTIN RECEPTOR PROTEIN 1 | 83 | 157 | 1.0E-23 |
| 2 | g4085.t17 | PANTHER | PTHR20855 | ADIPOR/PROGESTIN RECEPTOR-RELATED | 83 | 157 | 1.0E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
