General information for g4085.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Adiponectin receptor protein.
Parent gene
- The parent gene g4085 is located on chr_3: 30508439..30509086 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4085 | g4085.t4 | isoform | g4085.t4 | 30505937 | 30509086 |
| chr_3 | g4085 | g4085.t4 | exon | g4085.t4.exon1 | 30505937 | 30506615 |
| chr_3 | g4085 | g4085.t4 | cds | g4085.t4.CDS1 | 30506551 | 30506615 |
| chr_3 | g4085 | g4085.t4 | exon | g4085.t4.exon2 | 30506697 | 30506766 |
| chr_3 | g4085 | g4085.t4 | cds | g4085.t4.CDS2 | 30506697 | 30506766 |
| chr_3 | g4085 | g4085.t4 | exon | g4085.t4.exon3 | 30506845 | 30507043 |
| chr_3 | g4085 | g4085.t4 | cds | g4085.t4.CDS3 | 30506845 | 30507043 |
| chr_3 | g4085 | g4085.t4 | exon | g4085.t4.exon4 | 30507190 | 30507372 |
| chr_3 | g4085 | g4085.t4 | cds | g4085.t4.CDS4 | 30507190 | 30507372 |
| chr_3 | g4085 | g4085.t4 | exon | g4085.t4.exon5 | 30507463 | 30507657 |
| chr_3 | g4085 | g4085.t4 | cds | g4085.t4.CDS5 | 30507463 | 30507657 |
| chr_3 | g4085 | g4085.t4 | exon | g4085.t4.exon6 | 30507731 | 30507969 |
| chr_3 | g4085 | g4085.t4 | cds | g4085.t4.CDS6 | 30507731 | 30507969 |
| chr_3 | g4085 | g4085.t4 | exon | g4085.t4.exon7 | 30508859 | 30509086 |
| chr_3 | g4085 | g4085.t4 | cds | g4085.t4.CDS7 | 30508859 | 30509086 |
| chr_3 | g4085 | g4085.t4 | TSS | g4085.t4 | NA | NA |
| chr_3 | g4085 | g4085.t4 | TTS | g4085.t4 | NA | NA |
Sequences
>g4085.t4 Gene=g4085 Length=1793
ATGTTTGCAAAAAAGAACCGTCCATCACTTTCATCATCATTGGACGTGCAATCAAATATA
GAAGATGAGGATTTTATTTTGAGAAAACGAATAAGAGATAATTCGCCAATTGATGATCGA
TTAGATGGCGATTCTGAAAGTTTAAATCTTGCAAGTGATGAGGAGGAAGACATTCCTGGT
TGTCCTTTGCCTTCGACACCAGAAGATAATGAGCTTTTGGAAGCTGAGGCAGGCGTACTC
TCCGACGAAATTGATTTGGGAGCTCTTGCACATAATGCAGCAGAACAAGCTGAAGTTTTT
GTTAGAAAAGTATGGGAGGCTTCTTGGAAAGTTGTTCACTTTAAGAATTTGCCGAAATGG
TTGCAAGACAACGATTATCTTCATAGAGGTCATAGACCGCCTCTCGCATCATTTGGAGCT
TGCTTCAAATCGATCTTTAGACTACATACCGAAACTGGAAACATTTGGACACACTTGCTT
GGTTGTATAATGTTTATCGGCGCAACAATTTATTTTTTGTTGAGACCAGCATGGCAGATT
AATTTGGAAGAAAAAATGATTTTCTTGAGCTTTTTCATTGGTGCAATAGTTTGCCTTGGA
TTCTCATTCGCTTTTCACACTGTATCATGTCACTCAGAAATGATTGGAAAACTTTTTAGC
AAATTAGATTATTGTGGAATTGCTCTCTTAATTATGGGGAGTTTTGTACCTTGGCTTTAT
TACGGATTTTATTGCCATTATCAACCAAAAATCATTTATTTGACGATTGTCATTGTCTTA
GGATTCTTCTCAATTGTTACTTCTTTGTGGGACAAATTTTCTACGCCGCAATTGAGACCA
GTGAGAGCGAGCGTTTTCATGGCTTTTGGCTTATCGGGAGTAATACCTGCAATACACTAT
GTGTATATGGAAGGATGGTTCAATGAAATAAGCCGAAGTTCACTGGGATGGCTCGTTTTG
ATGGGACTGCTTTATATCCTTGGTGCACTTTTTTATGCTTTGAGAATACCCGAACGCTGG
TTCCCTGGCAAATTCGATCTTTGGGGTCAATCTCATCAAATTTTTCATGTACTGGTTATT
GTAGCTGCTTTAGTTCATTATCATGGAATATCAGAAATGGCTATGCATCGAGTATCGCTC
GGGGAATGTGATATTAAGCACACTGCAATTGTCTTATAAAGAATTAATAAAGTAGTGGGT
TTTTAAGCGAACTATGATGACGATGAGCAACAATGACAAAAGCTAGAAAGAAGCTAAATA
ATAAATTCAATGTACTTTTTTTGGGAGAGTATAATTATATGATTATAGTAAAAAACTAAT
TTCCTTATTAGCAAACACTATGCTGCACTCAAAAAAGAAAAGCATTCAGACATGTATATG
AATTAATATTACCACATAGCCTACATATAAATATATTTTTCATAGCACACCTATGATCTT
CTTAAAAGACTTTCCAACTTGTTTAAAAATTCGGTGGAATTGGTAGCAAGTAAAATCAAA
TTTAATGTACATTGCCCATAAAGTTTTGTATTCTTTTGTGTTATATTACTTAGTTTTAAA
ATTTATGTAAATAGCAATTGGAAAAAAAGTAAATTATTAAAACATGGGAAATCAATCAAT
ATCTTTAGTTGTGTGAAAAACTTTATTAAATTCTAAAACAGATATCTATATCTTAAATGA
AAAATGATCAATGCAAAAAAAAACTGTAAAAATAATTAAAATTCAATGAAAATTTTAAAA
TAAAATTTATTCTAAAGTATATAAAAGGCAACAATTTAATTTCTTTTATTGTT
>g4085.t4 Gene=g4085 Length=392
MFAKKNRPSLSSSLDVQSNIEDEDFILRKRIRDNSPIDDRLDGDSESLNLASDEEEDIPG
CPLPSTPEDNELLEAEAGVLSDEIDLGALAHNAAEQAEVFVRKVWEASWKVVHFKNLPKW
LQDNDYLHRGHRPPLASFGACFKSIFRLHTETGNIWTHLLGCIMFIGATIYFLLRPAWQI
NLEEKMIFLSFFIGAIVCLGFSFAFHTVSCHSEMIGKLFSKLDYCGIALLIMGSFVPWLY
YGFYCHYQPKIIYLTIVIVLGFFSIVTSLWDKFSTPQLRPVRASVFMAFGLSGVIPAIHY
VYMEGWFNEISRSSLGWLVLMGLLYILGALFYALRIPERWFPGKFDLWGQSHQIFHVLVI
VAALVHYHGISEMAMHRVSLGECDIKHTAIVL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4085.t4 | PANTHER | PTHR20855:SF28 | PROGESTIN AND ADIPOQ RECEPTOR FAMILY | 98 | 386 | 5.8E-131 |
| 3 | g4085.t4 | PANTHER | PTHR20855 | ADIPOR/PROGESTIN RECEPTOR-RELATED | 98 | 386 | 5.8E-131 |
| 1 | g4085.t4 | Pfam | PF03006 | Haemolysin-III related | 146 | 367 | 3.1E-75 |
| 18 | g4085.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 154 | - |
| 23 | g4085.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 155 | 174 | - |
| 14 | g4085.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 175 | 185 | - |
| 25 | g4085.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 186 | 206 | - |
| 16 | g4085.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 207 | 225 | - |
| 20 | g4085.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 226 | 244 | - |
| 13 | g4085.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 245 | 250 | - |
| 22 | g4085.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 251 | 270 | - |
| 17 | g4085.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 271 | 281 | - |
| 24 | g4085.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 282 | 303 | - |
| 12 | g4085.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 304 | 314 | - |
| 21 | g4085.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 315 | 334 | - |
| 15 | g4085.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 335 | 353 | - |
| 19 | g4085.t4 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 354 | 370 | - |
| 11 | g4085.t4 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 371 | 392 | - |
| 5 | g4085.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 152 | 174 | - |
| 10 | g4085.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 187 | 209 | - |
| 9 | g4085.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 224 | 244 | - |
| 8 | g4085.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 251 | 270 | - |
| 6 | g4085.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 285 | 307 | - |
| 7 | g4085.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 314 | 336 | - |
| 4 | g4085.t4 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 351 | 370 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K07297 (adiponectin receptor)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
