Gene loci information

Transcript annotation

  • This transcript has been annotated as Adiponectin receptor protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g4085 g4085.t7 isoform g4085.t7 30505984 30507969
chr_3 g4085 g4085.t7 exon g4085.t7.exon1 30505984 30506615
chr_3 g4085 g4085.t7 cds g4085.t7.CDS1 30506551 30506615
chr_3 g4085 g4085.t7 exon g4085.t7.exon2 30506697 30506766
chr_3 g4085 g4085.t7 cds g4085.t7.CDS2 30506697 30506766
chr_3 g4085 g4085.t7 exon g4085.t7.exon3 30506845 30507043
chr_3 g4085 g4085.t7 cds g4085.t7.CDS3 30506845 30507043
chr_3 g4085 g4085.t7 exon g4085.t7.exon4 30507190 30507372
chr_3 g4085 g4085.t7 cds g4085.t7.CDS4 30507190 30507372
chr_3 g4085 g4085.t7 exon g4085.t7.exon5 30507463 30507657
chr_3 g4085 g4085.t7 cds g4085.t7.CDS5 30507463 30507635
chr_3 g4085 g4085.t7 exon g4085.t7.exon6 30507731 30507969
chr_3 g4085 g4085.t7 TSS g4085.t7 NA NA
chr_3 g4085 g4085.t7 TTS g4085.t7 NA NA

Sequences

>g4085.t7 Gene=g4085 Length=1518
GCAGGCGTACTCTCCGACGAAATTGATTTGGGAGCTCTTGCACATAATGCAGCAGAACAA
GCTGAAGTTTTTGTTAGAAAAGTATGGGAGGCTTCTTGGAAAGTTGTTCACTTTAAGAAT
TTGCCGAAATGGTTGCAAGACAACGATTATCTTCATAGAGGTCATAGACCGCCTCTCGCA
TCATTTGGAGCTTGCTTCAAATCGATCTTTAGACTACATACCGAAACTGGAAACATTTGG
ACACACTTGCTTGGTTGTATAATGTTTATCGGCGCAACAATTTATTTTTTGTTGAGACCA
GCATGGCAGATTAATTTGGAAGAAAAAATGATTTTCTTGAGCTTTTTCATTGGTGCAATA
GTTTGCCTTGGATTCTCATTCGCTTTTCACACTGTATCATGTCACTCAGAAATGATTGGA
AAACTTTTTAGCAAATTAGATTATTGTGGAATTGCTCTCTTAATTATGGGGAGTTTTGTA
CCTTGGCTTTATTACGGATTTTATTGCCATTATCAACCAAAAATCATTTATTTGACGATT
GTCATTGTCTTAGGATTCTTCTCAATTGTTACTTCTTTGTGGGACAAATTTTCTACGCCG
CAATTGAGACCAGTGAGAGCGAGCGTTTTCATGGCTTTTGGCTTATCGGGAGTAATACCT
GCAATACACTATGTGTATATGGAAGGATGGTTCAATGAAATAAGCCGAAGTTCACTGGGA
TGGCTCGTTTTGATGGGACTGCTTTATATCCTTGGTGCACTTTTTTATGCTTTGAGAATA
CCCGAACGCTGGTTCCCTGGCAAATTCGATCTTTGGGGTCAATCTCATCAAATTTTTCAT
GTACTGGTTATTGTAGCTGCTTTAGTTCATTATCATGGAATATCAGAAATGGCTATGCAT
CGAGTATCGCTCGGGGAATGTGATATTAAGCACACTGCAATTGTCTTATAAAGAATTAAT
AAAGTAGTGGGTTTTTAAGCGAACTATGATGACGATGAGCAACAATGACAAAAGCTAGAA
AGAAGCTAAATAATAAATTCAATGTACTTTTTTTGGGAGAGTATAATTATATGATTATAG
TAAAAAACTAATTTCCTTATTAGCAAACACTATGCTGCACTCAAAAAAGAAAAGCATTCA
GACATGTATATGAATTAATATTACCACATAGCCTACATATAAATATATTTTTCATAGCAC
ACCTATGATCTTCTTAAAAGACTTTCCAACTTGTTTAAAAATTCGGTGGAATTGGTAGCA
AGTAAAATCAAATTTAATGTACATTGCCCATAAAGTTTTGTATTCTTTTGTGTTATATTA
CTTAGTTTTAAAATTTATGTAAATAGCAATTGGAAAAAAAGTAAATTATTAAAACATGGG
AAATCAATCAATATCTTTAGTTGTGTGAAAAACTTTATTAAATTCTAAAACAGATATCTA
TATCTTAAATGAAAAATGATCAATGCAAAAAAAAACTGTAAAAATAATTAAAATTCAATG
AAAATTTTAAAATAAAAT

>g4085.t7 Gene=g4085 Length=229
MFIGATIYFLLRPAWQINLEEKMIFLSFFIGAIVCLGFSFAFHTVSCHSEMIGKLFSKLD
YCGIALLIMGSFVPWLYYGFYCHYQPKIIYLTIVIVLGFFSIVTSLWDKFSTPQLRPVRA
SVFMAFGLSGVIPAIHYVYMEGWFNEISRSSLGWLVLMGLLYILGALFYALRIPERWFPG
KFDLWGQSHQIFHVLVIVAALVHYHGISEMAMHRVSLGECDIKHTAIVL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g4085.t7 PANTHER PTHR20855:SF28 PROGESTIN AND ADIPOQ RECEPTOR FAMILY 2 223 5.8E-88
3 g4085.t7 PANTHER PTHR20855 ADIPOR/PROGESTIN RECEPTOR-RELATED 2 223 5.8E-88
1 g4085.t7 Pfam PF03006 Haemolysin-III related 2 204 2.2E-65
17 g4085.t7 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
18 g4085.t7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
19 g4085.t7 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 11 -
26 g4085.t7 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 12 16 -
16 g4085.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 25 -
23 g4085.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 26 47 -
11 g4085.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 48 58 -
22 g4085.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 59 77 -
14 g4085.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 78 88 -
25 g4085.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 89 108 -
12 g4085.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 109 119 -
24 g4085.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 120 139 -
15 g4085.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 140 150 -
20 g4085.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 151 171 -
10 g4085.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 172 190 -
21 g4085.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 191 207 -
13 g4085.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 208 229 -
7 g4085.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 24 46 -
9 g4085.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 61 81 -
4 g4085.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 88 107 -
5 g4085.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 122 144 -
6 g4085.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 151 173 -
8 g4085.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 188 207 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

## Warning: Removed 1 row(s) containing missing values (geom_path).

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values