General information for g4085.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Adiponectin receptor protein.
Parent gene
- The parent gene g4085 is located on chr_3: 30508439..30509086 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4085 | g4085.t9 | isoform | g4085.t9 | 30505984 | 30509086 |
| chr_3 | g4085 | g4085.t9 | exon | g4085.t9.exon1 | 30505984 | 30506615 |
| chr_3 | g4085 | g4085.t9 | exon | g4085.t9.exon2 | 30506697 | 30506766 |
| chr_3 | g4085 | g4085.t9 | exon | g4085.t9.exon3 | 30506845 | 30507043 |
| chr_3 | g4085 | g4085.t9 | cds | g4085.t9.CDS1 | 30506963 | 30507043 |
| chr_3 | g4085 | g4085.t9 | exon | g4085.t9.exon4 | 30507190 | 30507367 |
| chr_3 | g4085 | g4085.t9 | cds | g4085.t9.CDS2 | 30507190 | 30507367 |
| chr_3 | g4085 | g4085.t9 | exon | g4085.t9.exon5 | 30507463 | 30507657 |
| chr_3 | g4085 | g4085.t9 | cds | g4085.t9.CDS3 | 30507463 | 30507657 |
| chr_3 | g4085 | g4085.t9 | exon | g4085.t9.exon6 | 30507731 | 30507987 |
| chr_3 | g4085 | g4085.t9 | cds | g4085.t9.CDS4 | 30507731 | 30507987 |
| chr_3 | g4085 | g4085.t9 | exon | g4085.t9.exon7 | 30508859 | 30509086 |
| chr_3 | g4085 | g4085.t9 | cds | g4085.t9.CDS5 | 30508859 | 30509086 |
| chr_3 | g4085 | g4085.t9 | TSS | g4085.t9 | NA | NA |
| chr_3 | g4085 | g4085.t9 | TTS | g4085.t9 | NA | NA |
Sequences
>g4085.t9 Gene=g4085 Length=1759
ATGTTTGCAAAAAAGAACCGTCCATCACTTTCATCATCATTGGACGTGCAATCAAATATA
GAAGATGAGGATTTTATTTTGAGAAAACGAATAAGAGATAATTCGCCAATTGATGATCGA
TTAGATGGCGATTCTGAAAGTTTAAATCTTGCAAGTGATGAGGAGGAAGACATTCCTGGT
TGTCCTTTGCCTTCGACACCAGAAGATAATGAGCTTTTGGAAGCTGAGATGACAGAAGTT
TTAAAGGCAGGCGTACTCTCCGACGAAATTGATTTGGGAGCTCTTGCACATAATGCAGCA
GAACAAGCTGAAGTTTTTGTTAGAAAAGTATGGGAGGCTTCTTGGAAAGTTGTTCACTTT
AAGAATTTGCCGAAATGGTTGCAAGACAACGATTATCTTCATAGAGGTCATAGACCGCCT
CTCGCATCATTTGGAGCTTGCTTCAAATCGATCTTTAGACTACATACCGAAACTGGAAAC
ATTTGGACACACTTGCTTGGTTGTATAATGTTTATCGGCGCAACAATTTATTTTTTGTTG
AGACCAGCATGGCAGATTAATTTGGAAGAAAAAATGATTTTCTTGAGCTTTTTCATTGGT
GCAATAGTTTGCCTTGGATTCTCATTCGCTTTTCACACTGTATCATGTCACTCAGAAATG
ATTGGAAAACTTTTTAGCAAATTATTGTGGAATTGCTCTCTTAATTATGGGGAGTTTTGT
ACCTTGGCTTTATTACGGATTTTATTGCCATTATCAACCAAAAATCATTTATTTGACGAT
TGTCATTGTCTTAGGATTCTTCTCAATTGTTACTTCTTTGTGGGACAAATTTTCTACGCC
GCAATTGAGACCAGTGAGAGCGAGCGTTTTCATGGCTTTTGGCTTATCGGGAGTAATACC
TGCAATACACTATGTGTATATGGAAGGATGGTTCAATGAAATAAGCCGAAGTTCACTGGG
ATGGCTCGTTTTGATGGGACTGCTTTATATCCTTGGTGCACTTTTTTATGCTTTGAGAAT
ACCCGAACGCTGGTTCCCTGGCAAATTCGATCTTTGGGGTCAATCTCATCAAATTTTTCA
TGTACTGGTTATTGTAGCTGCTTTAGTTCATTATCATGGAATATCAGAAATGGCTATGCA
TCGAGTATCGCTCGGGGAATGTGATATTAAGCACACTGCAATTGTCTTATAAAGAATTAA
TAAAGTAGTGGGTTTTTAAGCGAACTATGATGACGATGAGCAACAATGACAAAAGCTAGA
AAGAAGCTAAATAATAAATTCAATGTACTTTTTTTGGGAGAGTATAATTATATGATTATA
GTAAAAAACTAATTTCCTTATTAGCAAACACTATGCTGCACTCAAAAAAGAAAAGCATTC
AGACATGTATATGAATTAATATTACCACATAGCCTACATATAAATATATTTTTCATAGCA
CACCTATGATCTTCTTAAAAGACTTTCCAACTTGTTTAAAAATTCGGTGGAATTGGTAGC
AAGTAAAATCAAATTTAATGTACATTGCCCATAAAGTTTTGTATTCTTTTGTGTTATATT
ACTTAGTTTTAAAATTTATGTAAATAGCAATTGGAAAAAAAGTAAATTATTAAAACATGG
GAAATCAATCAATATCTTTAGTTGTGTGAAAAACTTTATTAAATTCTAAAACAGATATCT
ATATCTTAAATGAAAAATGATCAATGCAAAAAAAAACTGTAAAAATAATTAAAATTCAAT
GAAAATTTTAAAATAAAAT
>g4085.t9 Gene=g4085 Length=312
MFAKKNRPSLSSSLDVQSNIEDEDFILRKRIRDNSPIDDRLDGDSESLNLASDEEEDIPG
CPLPSTPEDNELLEAEMTEVLKAGVLSDEIDLGALAHNAAEQAEVFVRKVWEASWKVVHF
KNLPKWLQDNDYLHRGHRPPLASFGACFKSIFRLHTETGNIWTHLLGCIMFIGATIYFLL
RPAWQINLEEKMIFLSFFIGAIVCLGFSFAFHTVSCHSEMIGKLFSKLLWNCSLNYGEFC
TLALLRILLPLSTKNHLFDDCHCLRILLNCYFFVGQIFYAAIETSESERFHGFWLIGSNT
CNTLCVYGRMVQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4085.t9 | PANTHER | PTHR20855:SF33 | ADIPONECTIN RECEPTOR PROTEIN 2 | 95 | 230 | 1.3E-54 |
| 3 | g4085.t9 | PANTHER | PTHR20855 | ADIPOR/PROGESTIN RECEPTOR-RELATED | 95 | 230 | 1.3E-54 |
| 1 | g4085.t9 | Pfam | PF03006 | Haemolysin-III related | 152 | 228 | 1.4E-17 |
| 8 | g4085.t9 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 160 | - |
| 14 | g4085.t9 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 161 | 180 | - |
| 7 | g4085.t9 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 181 | 191 | - |
| 12 | g4085.t9 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 192 | 214 | - |
| 9 | g4085.t9 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 215 | 233 | - |
| 13 | g4085.t9 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 234 | 251 | - |
| 6 | g4085.t9 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 252 | 262 | - |
| 11 | g4085.t9 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 263 | 282 | - |
| 10 | g4085.t9 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 283 | 312 | - |
| 5 | g4085.t9 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 158 | 180 | - |
| 4 | g4085.t9 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 193 | 215 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
