Gene loci information

Transcript annotation

  • This transcript has been annotated as Transcription-associated protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g41 g41.t1 TSS g41.t1 388892 388892
chr_3 g41 g41.t1 isoform g41.t1 388980 400542
chr_3 g41 g41.t1 exon g41.t1.exon1 388980 389177
chr_3 g41 g41.t1 cds g41.t1.CDS1 388980 389177
chr_3 g41 g41.t1 exon g41.t1.exon2 389241 389426
chr_3 g41 g41.t1 cds g41.t1.CDS2 389241 389426
chr_3 g41 g41.t1 exon g41.t1.exon3 389478 393918
chr_3 g41 g41.t1 cds g41.t1.CDS3 389478 393918
chr_3 g41 g41.t1 exon g41.t1.exon4 393979 394043
chr_3 g41 g41.t1 cds g41.t1.CDS4 393979 394043
chr_3 g41 g41.t1 exon g41.t1.exon5 394101 399133
chr_3 g41 g41.t1 cds g41.t1.CDS5 394101 399133
chr_3 g41 g41.t1 exon g41.t1.exon6 399197 399398
chr_3 g41 g41.t1 cds g41.t1.CDS6 399197 399398
chr_3 g41 g41.t1 exon g41.t1.exon7 399456 400178
chr_3 g41 g41.t1 cds g41.t1.CDS7 399456 400178
chr_3 g41 g41.t1 exon g41.t1.exon8 400237 400542
chr_3 g41 g41.t1 cds g41.t1.CDS8 400237 400542
chr_3 g41 g41.t1 TTS g41.t1 NA NA

Sequences

>g41.t1 Gene=g41 Length=11154
ATGGAAAATTTAAAGGTTTTAGATAATTCAAACATACCAGAAGAGCAAAAAGCAAAAATA
ATTAACGAAATAAGTGAAACTTTTGATACAATTTGCAATTCTGAAAAAAATCAAAATGTT
CTTGAAATATTAAACATTTTCATGAATTATCTTAAAAATGGAGAATATCAATTTTTTTCT
GAGAGTCCAACTCAAAAAATCCGGAAAAGTATTCTTGAGATGTTGCATAGACTTCCAATG
AGTGAAGCTTTGAGACCTCATATCATTTCAGTGTTATCATTGATGCTAACATTGATAAGA
GAAGATAATGAAGAGAATGTTTTGATATGTTTGAGGATAATAATTGATTTACATAAGCAA
TATCGACCAGCATTTTATCCACAGATCAAAGAATTTCTTGGATATATTTCAAACATTTAC
TCCAATTTGCCACTAAAAATGGATAAAATATTTGATCCTCGTTTTTCACGTTTAGATAAG
ACAAATTTCAATATTGATGACATTTATATGATCACAGACAAATGTTTGCCAAGAGGAAGA
AATTCATTTAAAGTATTACAGGAACTTCCAATTGTTTTGGTTCTTCTTTATCAGCTTTAT
AAACAAAATATACATGACCATGTTGTTGTGTTTTTACCAGCTATTCTCACAACTGTCACA
TTGGAGCCTAAAAAAGAATTTCGTGAAAAAGAGCATTTCAATCGTGAACTATTTGTGGAT
TTTTTGGGAGCACAAATTAAAACTTTGGCATTTCTTGCCTACACAATAAAAACATTTTCT
GGTGGACTGATTGAAATAATTGAAAATCATGCAAAAACTTTAGTTGAAGGAATGATTCTT
TTACTACGATTATGTCCTAAAGAAGTTGCTCATTTAAGGAAAGAATTGCTTGTTGCAACT
CGTCATATTTTGGCAACAAATTTGAGAACTCATTTTATTCCCTCACTGGAGCTTCTCTTT
GATGAAGATTTATTATTAGGAAAATCTGGATACACAGCTCTTTGCTCATTACGACCATTA
GCATTTTCAACACTTGGTGACTTTATTCATCATGTGAGACTCGAATTAAGTCTTGATACA
CTTTCAAAAGCAATTCAATTGTTTTCAAAAAATATTCATGATGAAACACTGCCACTTGCA
ATTCAAATCATGTCAATCAGACTGCTACTTAATTTAGTTGAATGCCTTAGAAGTCAGAGA
CATGATCAAATTGTTAATGAGCTCGCTATTAGAAAAGGACTTTTGCAAAATATGATGAAA
GTTTTTATTCTTAAATTTCATACAATTGGTAAAATGCAGATGCCTTTAATTATTGAAAAA
TGGAAATCATCAACTAATAGTCAACCAACTTCAAATAATACAGAGCAAACTAGAGAAAAA
GAGTTTACAACAGTCGATATAATTCCTGAAGCAATTTCTAAACTCACATCGATTGGTTTC
ACACCTCCATCAAGTTTAAATTTATCAGAATATAAATTGCTCATAAAATCACTTTTTGGA
GGAATTAAAACAATTTTATTTGGAATAAGTTTCCTTGAAAGTGGTGGTTTACAGCAGCAA
CAACAACAACAAATGTCAATTGTTCTTTCACCACAAGAAGTTCAATATTTTATTGACTTT
TTCACATGGTCATTGGATGCTTTTTATATATACAGAATTAGTTCAAATGGTGCAAGTCAG
AAAATTGTAATATCAGTTGCCACACAAAGAGAGGAAAAAGAACTGCTTGAACTTTTTAGT
GGTCTCTTTTTAAATCTTTCAAATCAAAATTTTCAAGAAATATTTACTGCAACAATAGAA
GTGTTGATTGAAAAAATGAAAGTAAATCAAAATCTTCAAATTATCATCAACACTTTTCTT
TCATATCGTGCAACATCGCCTATTTTTGCATCTGTAATGGTAGAGTTTCTTCTTAAAAGA
ATGGATGCAATTGGTTCAACTGATACAGAAGTTTCAAATTTATACTTAAAAATGTTTAAA
CTTGTATGTGGAAGTGTGTCGATGTTCAGTGTTGAAAATGAAGGCATGATAAGACCATAT
TTACAGACCATTGTTGTTAACTCTATGGAAATGGCAATGAGAGCTGAAGAACCTTATAAT
TATTTTCTTTTATTGAGAGCATTATTCCGTTCAATAGGAGGTGGAACATATGACATTTTA
TATCAAGAATTTCTTCCATTATTGCCTAATTTACTTGGTGGTTTAAATAGATTACAAAGT
GGATGTCATGAACAACAAATGAAAGATTTATTTGTTGAATTATGTTTGACAGTTCCTGTT
AGACTTTCATCATTACTTCCTTTTCTGCCTATGTTAATGGAACCTTTAGTCAGTGCACTT
AATGGCTCACCAATACTTGTAAATCAGGGATTACGTACACTTGAACTTTGTGTTGACAAT
TTACTTCCTGACTTCTTCTGTGATCATATTCAACCTGTTAGAGCTGAACTTATGCAATCG
CTTTGGAAAACATTACGAAATGTGGATAATTCAGCAATGGGTGCATTCAGAATTTTAGGA
AAGTTTGGAGGTGGAAACAGGAATATGCTTATTGAACCACAAAAAATTGAATATCAAGAA
TTCGAACAAGATACAGTTGCAATTAAACTTTCATATTCTAACAAGAGAGTTGAACTGCCA
GCAGAACCAATAATCAATTCTGCATATCAAGTATTAAAAACTTCAACTGATTCATTTTAT
TTGAAGGAGAGTTGGAATGTTGTTAAAATTTTTCTCTTTTCATCTATGAATATCGATGAT
GACAGAAATTTGCTATTTAATCTTTTAAATCATTGCAATTTTACAATGAATGACAACAAT
AGTGAAAATCTTTTAAAATATCAACAAAATTTTGATAAAAATGTAACAAAACTAGCTCTC
TCGGCAATGTTTTTGGCAGCAAATAATAAAGAGACTGCGAAAGATGCTTTATCAATATGT
GCACATATTATCGAACGTCATGTGATAATTGCAATTGTTAATCAAATAGGAATGGTTGAG
AAAGGTGATGAAATGACATTACAGAAATCGTTACTGCTATTTGATGCTCTTTTCTCATTA
ATGGACAGTGAAGACAAAACAATTTACAATTTTGCAACTTCAGTCCTTCAAATAGTTTTA
AAAATTTCAACTTATATACTTGGATCAATGAATAGAACATCGAAACTTCCAATGATTCAG
TATGTTTTTGAAAAAGCAATTAATTTACTTTATGAACGTTCTTCTTATGCTAAAAAAGGT
GGATGCATCATTACAAAATTTCTTTGTCAAAATCTACCATCAACAGTATTTTTCAAAAAT
TTATATTCAGTGTTAAAAGCACATCTTTTTGTTATTCGTGATTTATCAGACAATATTTGT
CGTGGAACAATCGATATTGCTGAAAAGAATATTGAATCTATTTTAGAATTGACTGTGACT
TATGTCACATGCGAGGGTGCAACAGAAGAATTTGGAAAAATTTATAATACCATAATCAAT
GAGCTTGTTCTTCAAACTGCTAGTCCACACAAACTAATTCGTCAAGTTGCAATGAAAAGT
ATCAATCAAGTTGCACAACAACAAAAAATAACAGTTTCTTCACTTCTTGAACCTTACAAG
AGCTTTTTTGCTGATGTGATTGTATTTTCACCAGCAAAAACTTATTTAAGACATCAACCT
TTATCTGCACAAATTGGAATTTTAGAAGCTAATTATTTTTGTACATCACTTGAACCAAAA
TTGATGAAATTTGATAATTTTCAATTTCTAACAGATGTCAAAATTATTATCAAATGTGAC
GATGACACAATGTCACGATGTGATGCATATAAAGATGTCAAATTGCTTCCAGAATTGCGA
GAAAGTGCAATGCGAGTGCTCGTTTCTTGGCACTATATTTATCACAATCAGCACTACGAT
ACTGAGAAAGTCAAGAGTATACACTTTTGTGAAGATGCATTTATAACTTTATTTAAAGCT
CTTGAAAATTATCAAGCATTACAAAAAACTGCATTTGAGTGTTTGAAAAGACTTATTGAT
GAGTGCAAAGAAAAATCAGAAACTGGATGGCCTGTTCAGCATTCTTTTTTGGAAACACTT
GGTGATTACTCAAGTTGGACGGCAAACAGTATAAAAAGACTTTCGTATTATTGCCTCCTC
TTTCCAAAAATGTTTACTGAAAAAACATGTGAACAACTTTTTGAAATTGTTAAGAAACTT
TTGCAAAATTCAATTATTGCAAATAAGGACCAAAATTATTTAAAAATTGCTAAAACTGGT
GAAAATGAACTAAAAATTGCTGCTATAATTGACTTGTTTCATTTAATACCGACATGTAGT
GCAAAGTTTGTTGTTTTATTGATTCGTTTAGTGCTGACAACCGAAGAGTCTGTTTCGATT
GAATCTTCATGTCCTTATAGAGAGCCTCTTGTTAAGTTACTTTTGCGTTATCCAGAAGAG
ACAATAAATTTCTTGCTAGCAGACGATCAAATTAAAAATCAACAATACGTTCGATTTACA
ATATATTTGTTGAAACATAAAGATGGAAATTCCTTTAAAACTTTGATGGAATGTAAAAGT
TTAAGATTAAAAGAATTGATTTTGAGAGGAAATGCTGGTACCAGTAGAAGTGATCAAAAT
GATTCTCAATATCATGCAGTGCTAATAATAAACACAATGATTGAGTTGAATAATCAATGG
TTGCCTACACAAATTGGAATTGTCGATGCTCTTAATCAAATTTGGAAAATTGATTTGAAC
AAAAATTATGAACAACTAAATATGGTTTGCGATTTTTGGCATTTGGTTGTAAAAATTTTA
CTTCATTATTTTGAGCACAATCCAGGTGATATTGATTTGCTATTTCAATTATTAAACATC
TATAACATTCGATTTGTTCCTGATTTTCAATTTTTCCGAGATTTTATTTATAAAATTTGC
CAAAACTACACAGTTGATTGGAAACGTAATGTATTTTTCAAATTTGTTGAATATTATAAT
CATCGACAAAATGTAGCAATTGATTTAAAAATTAAAATACTAACAATGATTCTTATCCCG
AGTTTTGCTATAAGCTTCGAAAAAGGTGAAGAAAGTAGATTAATAAGAGGACACGCGCAG
GATGAAGAAAGCAATATTATGTCGGTGTTTATTAATTCAATAATCAATCCATTCATGATG
AAGGAAAATGATGATGGATTACGCATTGCTCTTTTGCAATTTGCTTGTTTACTCGTTGAA
AGAGCGTCAGTTTATATACCAAGTAACAAGAAAGATGACATAAAAATGTTGACAACCTTT
GGATATTCAAGTTTGCTTCATTCAAAAAATTATTGGGATCCAACAGCAGTATATAATGGA
CACCTATTATTATCACATATTATTGCTAAATTGGCAAACAAAAAGTCATGGCAAGAAGTT
GTATTCAAAGTTTTTCACTCACTTCTAAAAGCACACGCTATTGAAGCAAGAAATATTGTA
AGACAAACTTTAGAAGTATTCATGCCAATGATGCCTCTGAAAATGAATGATCAATCAAAT
TTGTCACTTATTAATTTAACAAAATCTGTCATAATCAAGGATGGGCATCAGATTCTTCAA
CTTTATCATGTATTTCAAGTCATTATTCGTCATCATTTGATTTACTATCCAGTAAGACAT
GAAATAATTCAAAATATGATTCAATCAATGCAACGTCTTGAGTTATCAAATTCTGTTGAT
TATCGAAAGCTTGCTATAGACATAGCAGAAGTAATAATCAATTGGGAATTAAAAAGAATA
AAAGAATCCACAGATGATTATTATGATGAAATGCCATCTACTTCGGGTGGTATTAAACGA
ACACATCAAGATATTGGTTCAATCAAAAAGCAAGCTATAGGTGAAAATTCACCACAACTT
GGTCTCGCACTTTTACAAAGTGATGAAGTGTCAAACAAACCAATTGAATGGGTTCATTGC
AAGTCTGTTATCAATTTTCTATTTGATTTGCTATTCATGCTGAGTGAACAAAATACAAGT
CAAATGATGACAGCTGCTATTTCACCAAATGAAGTAATTTCAAAGCATAGTTTGAATTTA
CTTAAAAAAGTGCTCAAAAAAGATATATGGATAAAAGAAGGTGATGAATTGCCATTAAAT
CGTTTGAAAAAAGTTTTTGAAGAACCGTCGAAAGTAAGCAGCACAACAATATCAAGCTTT
TTGGAAATTTTTATTCATTTGCTCGATGAAATGGAAGAAAGTAAAATTTTAATGCTTATC
AAAACTTTACAACCGGGTTTGGCAATATGCATTACAAGTGCACAAACAAAAGTTCTTCGT
CTTATGTCGACATTTTTATCCAAACTTTTTACTTTGTTTCCACCTGAAATTTATATGAAA
CATGATGAACTTAGATTTTTGTATCAAACTGTAGAAAAAGCTATTCGAAATGGTTTGGAA
GTATTTGAAAAAGATGCAGAAACACCAACAGCTTCATTCTTTGGAACTTTTTTGATTTTA
AAGACAGCACTTTCAAATGAGACAAAATATTTTGATAAATTTGTAGAAAAATTCACACGC
TTTGTGGTTTTGCTGAAAAATGACCATTTGAAAGTTAATTCACAACAACAATCAACTCAA
CAAGCACCTTCACCTAATACAGAATTGACTAAGGAAATGCTAATGCAGTCATTATCATTA
TTGAAGAATTATTTAAACATTATGTCAGCAGAAACACGTAAAACTTATATCACGACAATA
ATCGATTTAATTGAGAAAAGCAACGATACAAAAATTATTAAATCCATTATTCAATTACAT
GAAAGTTGGTTCAATATGAAAAATTCAGAAAGTGAACCATGCATGCGAGAGAAAATTTTA
CTCCTACAAAAACTCACTTATCATATCGAAAATCGTTTCAACAGTGAGACTCAATTGAAT
ATACAATTTTTGGAACTCATTTATTCCATCTTTTCAAATTCAAATGAATTAGAATTGACT
TCTAAATTAGATCGTGCGTTCTTAGCTGGTTTAAAATGCTCTCAATTTGAAATTAGACAA
AAGTTCTTTGACTTTTTCAATAAGACTGTTGATAAAACTGTTTATACAAGACTGCTCTAC
ATTTTGTCCACAAGAACTTGGGATCATCTTGGACAACATTATTGGATTAAACAATGTATT
GAATTACTCTTTCTCACTGTCGACAGTCAAAATATTCAAGAAATGATAGAAAATGAATTT
AAACTTCCTAAAATAAAAGTATCACAGCAAATGCATGAATTGTTTTCATCATCAGAAACT
GAAGACTTTAAAGATAATATTGAAGCTGAAAAATATGAAGACATCAATCAAATTGCGAAT
GCTTATAATGCTATTCAAAGTCGTGACGTGTTAATCAAGCGTCTTGTTTCATCACAAACA
AAACTTTCAATCCTCGCTCGATTTAATAACACGGAAAATTTCTTGAAAGCTGTCGTACAA
ATTTGTCATGTTGATGGAAAATTGTCAGAAAAATTATGGATTAAAATGTTTCCTCAACTG
TGGTCAAATTTTGAATATACTGAAAGAAAATCATTAACTAAAGAAATAATCCCATTTTTG
TCAACTGGTACAAAAGTTAATGTAAATGGATCGAACATGAGTGCATTGAATACATTTGTG
CAGTCTTTGGCAGTTTGTAATCCACCAGTTTTAATTTCACCTAGACTTTTGAAGTCTATA
AGTAAAATTCATAATGTCTGGCACACAGTGACACTTCTTACTGAAGATATGGCTGAAAAT
TATATGAACGAAATAGAAGAAGTTGATGAATTTGAATTAGACGATAATGTTGATGAAAAT
GCTATTGAAGTATTTGGATCATTATCAAGTTTATATTCATCATTAAAAGAAGAAGATTTA
TGGGCTGGATTGTGGAAAAATCATGCAAAATATCCAGAAACAAATGCAGCAATTTTCTTT
GAACAAATGGGATATTTTGAGGAAGCACAAAACATGTATGAGTCCGTAATGCTAAAGTTT
AAGCAAGAAGTTTCCAATGGTATAAGTATGAATGGAATTACAAATGAAATTGATTTATGG
GAAGAACATTGGATCAGATGCTCTAGAGAATTGAATGAATGGAATAGTTTGATGAATTAT
GCATCGACAAATCGAGATAAATACATAATGTTATCAATTGATTGTGCATGGAAATTATCT
GATTGGAATTCAATGTATCAGTCATTTATTAGAGCAGAGCAGCTTATTTCAAAACAAAGT
AATTATCAGTTAGGTCTCTATGGTGGATATATTTCACTTTTGTGCCAAAAAGAAACAGTT
ATAAATAAATATATTGAAGTGGCATCAACAGCAAGTCTTCAAGAATGGCGTCATCTTCCA
AGCATAATTTCAAATGTTCACATACCTGTCCTTCAAATTTCCCAACAAATCATGGAATTA
CAAGAAGCAGGTCAAATTCATCAAGATTTGCTCAGAAAACAAGCGCTTCCTTTTCATGAC
ATGAAGAGTATAATTAAAACCTGGAGAAATCGATTACCAATAATTTCTGATGATTTGTCT
CATTGGAAAGATGTTTTTACTTGGCGACAACATCATTATAAGCTAATTGTAGAAAATGCT
TCTAGCAGTAATGTGATTGTTTCAAATTTAGGCTCTCAGGCTTCAGCACAAACTTGTATC
AAACTAGCAAAAATTGCAAGAAAGCAAAATTTGACTTCTTTATGTCAGAAATCATTAAGT
GAAATTGACACAATTTCATCCATTCCACTCTCTGATTGCTTTCAAAAAATTATTCAGCAA
GTCAAAAACTACATGGCAATTGCACAATATTCAAATGATCCTAAAACAAATTTTATAGAT
GCATTGAAAACTGTTGAAAATGTAAATTTGGATCTGTTCCAAGCAGAATCAAAAGCAATT
TTGTTTGCATATAAAGGCTATTTACACTCTTACATTGACAATGCATTAGATGCAAACAAA
GCTTTTACAACTGCTGTTGATTTGTGTGACAATTCAACAAAAGCTTGGTCCTTGTACGGC
GAATATTTGGAAAATATTTTCAAAAAAGCATCAAAAAAATCTATTTCTTCAGGAATTTCC
GCAATCACTTGCTATTTGCATGCAGCTCGTGATCACAATGAAATGAAAGCGCGAAAACAT
TTAGCAAAAGTTTTATGGCTTTTGACATATGATGAAGCACGAACTGAAATGTTAAAGACT
CTTGATAGTTACATGTTTGGCATTCCAATGATCAACTGGCTTTCTTGGATTCCACAACTC
TTTAATATTCTTGTTCAATATGAAGGCGACACAATCATGAACTTACTCAATCAAATTGCG
AAAATTTTTCCACAAGCCGTTTATTTCCCCATCAGAACACTTTACCTTATGCTAAAAATA
GAACAGCGTGAGAGATATAAAAATATTGAACATTTGAAAAGTTTTGGGGATCAACCAGGT
ACATCAATGAATCAATCAAATCTACTTTCTATGAAATCGACAGCTGCTATGTGGCGTTGT
TCAAAAATTATGCAATTGGTAAGAGAAATTCACCCCACAATCGTGTGCTCTTTAGAAAAT
ATTTTGGATCAATTGATGTCAAAATCTGATATTGATGGCACTCGTTGGTTTCGTGAGAAT
ATTTTCGAAGAAAATTTGCATCAGTTAAAGCAAGGTTTGGCAAAATGCTATGGAATTGCA
TTTGATAATCGTATGTCAATTAATGAAGCAACCACTACACAACATACACTCAATTTCATT
AGAAAATTGATTTCGAATTTTAGTGTGATGTCTGAAAATGCTCAAACAGTTGAGCTACAA
GATCCAGTTTTTGTAAAATTAAGACAACAATTTGCTGATGGATTCAATTTTACACAGCCA
GAAAGTAACAAATTAATTGATTTAATAAAAAGACTGAAAACATGCATAAGTATTATGGAA
GAAAAAGTTAAATATTTGCCAAAGTCATTCTTAATTGAAGAAAAATACAGATTTTTATCA
AACTTTAGTCAAAAGACAGCAGAAATTGATTTGCCAGGGGAACTTTTGCTACCACGACAT
TCTCATTATCATATTAAGATTGCAAAATTCATGCCACGAGTTGAAATAATTCAAAAACAT
AATACTTCTGCTAGACGACTTTTCATTCAGGGCACAAATGGAAAGATTTATTCATATTTA
GTGGTGAATGACTCAGGAATGATTGATGCACGTCGTGAAGAACGTGTTTTGCAATTACTT
CAAATGTTGAATGGAAATTTAGTGAAATTTAAAGAAACAAGTAGAAGATTTCTGCATATA
ACTGTCCCAAGAGTTGTTCCAATATTTCCACAAATGAGATTAGTTGAGGATGACATAAGT
AGCATATCTCTTTTGGATGTGCTCAAAATGCATAGTTCCAAAATAAAAAATGAATATGAT
GCACCAATTGCTCGTTATTATGAACGATTTGCTGAAATTCAATTACGAGGTGCACAAACT
TCACATGCAGCACTTCGTGACATTTTCAAAGAAATTCAAATGAAAATGATTCCAAAAACT
ATCCTTAAAGAATGGACATCAAAGACATTCACATCAGCAACGGAATATTGGACATTTAGA
AAAATGTTTACTCTTCAACTTGCATTATGGTCAATAGTTGAATATGCTTTTCATTTGACT
CGTTTAAATCCTGATATGATGTACATGCATCAAGAATCTGGTTTAATTAATGTCTCTTAT
ATGAAATTTGATCTCGATGATATTAATGATGAAACAGCTTCAACTAGGCCTGTGCCTTTT
AGACTTACACCAAACATAACTGAACTCATCACAAATATCGGCATTCAAGGACCATTTTCA
GCTGTAATGATTGCTACTGCAAGATGTTTGCTTCAACCAAATTATCAAATCATGTCAATA
CTTAAAACAATTATACGTGATGAATTCATTACGATAAATCGGAAGCAAATTATCAACTCT
AAACCAATCGATATTAATGATGATCTTTCTCAAGATAAGACTTATTCTGAAATTAATTCT
GACAACATTATTGAATGTGTTGAAAAGTCAACAGCAATTGTTACAAAACGATTAGAAGAA
CTCATGTTTTTCGATCCCACAGAAGAAACTACAAATGTTTCACGACTGATAGAAAAAGCA
AAAAATTATGATTATTTATCACTGATGGATCCAAATTTTTATCCTTGGTTGTAA

>g41.t1 Gene=g41 Length=3717
MENLKVLDNSNIPEEQKAKIINEISETFDTICNSEKNQNVLEILNIFMNYLKNGEYQFFS
ESPTQKIRKSILEMLHRLPMSEALRPHIISVLSLMLTLIREDNEENVLICLRIIIDLHKQ
YRPAFYPQIKEFLGYISNIYSNLPLKMDKIFDPRFSRLDKTNFNIDDIYMITDKCLPRGR
NSFKVLQELPIVLVLLYQLYKQNIHDHVVVFLPAILTTVTLEPKKEFREKEHFNRELFVD
FLGAQIKTLAFLAYTIKTFSGGLIEIIENHAKTLVEGMILLLRLCPKEVAHLRKELLVAT
RHILATNLRTHFIPSLELLFDEDLLLGKSGYTALCSLRPLAFSTLGDFIHHVRLELSLDT
LSKAIQLFSKNIHDETLPLAIQIMSIRLLLNLVECLRSQRHDQIVNELAIRKGLLQNMMK
VFILKFHTIGKMQMPLIIEKWKSSTNSQPTSNNTEQTREKEFTTVDIIPEAISKLTSIGF
TPPSSLNLSEYKLLIKSLFGGIKTILFGISFLESGGLQQQQQQQMSIVLSPQEVQYFIDF
FTWSLDAFYIYRISSNGASQKIVISVATQREEKELLELFSGLFLNLSNQNFQEIFTATIE
VLIEKMKVNQNLQIIINTFLSYRATSPIFASVMVEFLLKRMDAIGSTDTEVSNLYLKMFK
LVCGSVSMFSVENEGMIRPYLQTIVVNSMEMAMRAEEPYNYFLLLRALFRSIGGGTYDIL
YQEFLPLLPNLLGGLNRLQSGCHEQQMKDLFVELCLTVPVRLSSLLPFLPMLMEPLVSAL
NGSPILVNQGLRTLELCVDNLLPDFFCDHIQPVRAELMQSLWKTLRNVDNSAMGAFRILG
KFGGGNRNMLIEPQKIEYQEFEQDTVAIKLSYSNKRVELPAEPIINSAYQVLKTSTDSFY
LKESWNVVKIFLFSSMNIDDDRNLLFNLLNHCNFTMNDNNSENLLKYQQNFDKNVTKLAL
SAMFLAANNKETAKDALSICAHIIERHVIIAIVNQIGMVEKGDEMTLQKSLLLFDALFSL
MDSEDKTIYNFATSVLQIVLKISTYILGSMNRTSKLPMIQYVFEKAINLLYERSSYAKKG
GCIITKFLCQNLPSTVFFKNLYSVLKAHLFVIRDLSDNICRGTIDIAEKNIESILELTVT
YVTCEGATEEFGKIYNTIINELVLQTASPHKLIRQVAMKSINQVAQQQKITVSSLLEPYK
SFFADVIVFSPAKTYLRHQPLSAQIGILEANYFCTSLEPKLMKFDNFQFLTDVKIIIKCD
DDTMSRCDAYKDVKLLPELRESAMRVLVSWHYIYHNQHYDTEKVKSIHFCEDAFITLFKA
LENYQALQKTAFECLKRLIDECKEKSETGWPVQHSFLETLGDYSSWTANSIKRLSYYCLL
FPKMFTEKTCEQLFEIVKKLLQNSIIANKDQNYLKIAKTGENELKIAAIIDLFHLIPTCS
AKFVVLLIRLVLTTEESVSIESSCPYREPLVKLLLRYPEETINFLLADDQIKNQQYVRFT
IYLLKHKDGNSFKTLMECKSLRLKELILRGNAGTSRSDQNDSQYHAVLIINTMIELNNQW
LPTQIGIVDALNQIWKIDLNKNYEQLNMVCDFWHLVVKILLHYFEHNPGDIDLLFQLLNI
YNIRFVPDFQFFRDFIYKICQNYTVDWKRNVFFKFVEYYNHRQNVAIDLKIKILTMILIP
SFAISFEKGEESRLIRGHAQDEESNIMSVFINSIINPFMMKENDDGLRIALLQFACLLVE
RASVYIPSNKKDDIKMLTTFGYSSLLHSKNYWDPTAVYNGHLLLSHIIAKLANKKSWQEV
VFKVFHSLLKAHAIEARNIVRQTLEVFMPMMPLKMNDQSNLSLINLTKSVIIKDGHQILQ
LYHVFQVIIRHHLIYYPVRHEIIQNMIQSMQRLELSNSVDYRKLAIDIAEVIINWELKRI
KESTDDYYDEMPSTSGGIKRTHQDIGSIKKQAIGENSPQLGLALLQSDEVSNKPIEWVHC
KSVINFLFDLLFMLSEQNTSQMMTAAISPNEVISKHSLNLLKKVLKKDIWIKEGDELPLN
RLKKVFEEPSKVSSTTISSFLEIFIHLLDEMEESKILMLIKTLQPGLAICITSAQTKVLR
LMSTFLSKLFTLFPPEIYMKHDELRFLYQTVEKAIRNGLEVFEKDAETPTASFFGTFLIL
KTALSNETKYFDKFVEKFTRFVVLLKNDHLKVNSQQQSTQQAPSPNTELTKEMLMQSLSL
LKNYLNIMSAETRKTYITTIIDLIEKSNDTKIIKSIIQLHESWFNMKNSESEPCMREKIL
LLQKLTYHIENRFNSETQLNIQFLELIYSIFSNSNELELTSKLDRAFLAGLKCSQFEIRQ
KFFDFFNKTVDKTVYTRLLYILSTRTWDHLGQHYWIKQCIELLFLTVDSQNIQEMIENEF
KLPKIKVSQQMHELFSSSETEDFKDNIEAEKYEDINQIANAYNAIQSRDVLIKRLVSSQT
KLSILARFNNTENFLKAVVQICHVDGKLSEKLWIKMFPQLWSNFEYTERKSLTKEIIPFL
STGTKVNVNGSNMSALNTFVQSLAVCNPPVLISPRLLKSISKIHNVWHTVTLLTEDMAEN
YMNEIEEVDEFELDDNVDENAIEVFGSLSSLYSSLKEEDLWAGLWKNHAKYPETNAAIFF
EQMGYFEEAQNMYESVMLKFKQEVSNGISMNGITNEIDLWEEHWIRCSRELNEWNSLMNY
ASTNRDKYIMLSIDCAWKLSDWNSMYQSFIRAEQLISKQSNYQLGLYGGYISLLCQKETV
INKYIEVASTASLQEWRHLPSIISNVHIPVLQISQQIMELQEAGQIHQDLLRKQALPFHD
MKSIIKTWRNRLPIISDDLSHWKDVFTWRQHHYKLIVENASSSNVIVSNLGSQASAQTCI
KLAKIARKQNLTSLCQKSLSEIDTISSIPLSDCFQKIIQQVKNYMAIAQYSNDPKTNFID
ALKTVENVNLDLFQAESKAILFAYKGYLHSYIDNALDANKAFTTAVDLCDNSTKAWSLYG
EYLENIFKKASKKSISSGISAITCYLHAARDHNEMKARKHLAKVLWLLTYDEARTEMLKT
LDSYMFGIPMINWLSWIPQLFNILVQYEGDTIMNLLNQIAKIFPQAVYFPIRTLYLMLKI
EQRERYKNIEHLKSFGDQPGTSMNQSNLLSMKSTAAMWRCSKIMQLVREIHPTIVCSLEN
ILDQLMSKSDIDGTRWFRENIFEENLHQLKQGLAKCYGIAFDNRMSINEATTTQHTLNFI
RKLISNFSVMSENAQTVELQDPVFVKLRQQFADGFNFTQPESNKLIDLIKRLKTCISIME
EKVKYLPKSFLIEEKYRFLSNFSQKTAEIDLPGELLLPRHSHYHIKIAKFMPRVEIIQKH
NTSARRLFIQGTNGKIYSYLVVNDSGMIDARREERVLQLLQMLNGNLVKFKETSRRFLHI
TVPRVVPIFPQMRLVEDDISSISLLDVLKMHSSKIKNEYDAPIARYYERFAEIQLRGAQT
SHAALRDIFKEIQMKMIPKTILKEWTSKTFTSATEYWTFRKMFTLQLALWSIVEYAFHLT
RLNPDMMYMHQESGLINVSYMKFDLDDINDETASTRPVPFRLTPNITELITNIGIQGPFS
AVMIATARCLLQPNYQIMSILKTIIRDEFITINRKQIINSKPIDINDDLSQDKTYSEINS
DNIIECVEKSTAIVTKRLEELMFFDPTEETTNVSRLIEKAKNYDYLSLMDPNFYPWL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g41.t1 CDD cd05163 PIKK_TRRAP 3347 3631 6.62706E-99
11 g41.t1 Coils Coil Coil 3717 3717 -
4 g41.t1 PANTHER PTHR11139:SF1 TRANSFORMATION/TRANSCRIPTION DOMAIN-ASSOCIATED PROTEIN 80 612 0.0
6 g41.t1 PANTHER PTHR11139 ATAXIA TELANGIECTASIA MUTATED ATM -RELATED 80 612 0.0
3 g41.t1 PANTHER PTHR11139:SF1 TRANSFORMATION/TRANSCRIPTION DOMAIN-ASSOCIATED PROTEIN 525 3712 0.0
5 g41.t1 PANTHER PTHR11139 ATAXIA TELANGIECTASIA MUTATED ATM -RELATED 525 3712 0.0
2 g41.t1 Pfam PF02259 FAT domain 2711 3046 6.4E-41
1 g41.t1 Pfam PF00454 Phosphatidylinositol 3- and 4-kinase 3389 3631 3.5E-15
13 g41.t1 ProSiteProfiles PS51189 FAT domain profile. 2556 3117 25.39
12 g41.t1 ProSiteProfiles PS50290 Phosphatidylinositol 3- and 4-kinases family profile. 3379 3717 11.168
14 g41.t1 ProSiteProfiles PS51190 FATC domain profile. 3685 3717 9.156
10 g41.t1 SMART SM00146 pi3k_hr1_6 3386 3681 2.0E-7
7 g41.t1 SUPERFAMILY SSF48371 ARM repeat 8 739 5.28E-8
8 g41.t1 SUPERFAMILY SSF48371 ARM repeat 952 1612 4.17E-8
9 g41.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 3284 3638 5.1E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005634 nucleus CC
GO:0005515 protein binding MF
GO:0016573 histone acetylation BP
GO:0000123 histone acetyltransferase complex CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values