Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Sterol O-acyltransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g4101 g4101.t3 TTS g4101.t3 30581898 30581898
chr_3 g4101 g4101.t3 isoform g4101.t3 30581961 30582986
chr_3 g4101 g4101.t3 exon g4101.t3.exon1 30581961 30582488
chr_3 g4101 g4101.t3 cds g4101.t3.CDS1 30582448 30582488
chr_3 g4101 g4101.t3 exon g4101.t3.exon2 30582548 30582986
chr_3 g4101 g4101.t3 cds g4101.t3.CDS2 30582548 30582986
chr_3 g4101 g4101.t3 TSS g4101.t3 30583773 30583773

Sequences

>g4101.t3 Gene=g4101 Length=967
ATGAAAGCTTATGCATTTATTCGTACAAATGTACCAAGAGCATTAAAATTAGGCAGAAAA
CGTAAATCATCAGAGGAAAATTCATCATCAGACGATAGCATATATGATTCAACATTACCA
GCAAGTGGAAGCGTTAAAGTCAATGAAAAACAACAGCTGCCATACTTTAGGCAATATGTG
TACTTCCTATTTGCACCAACACTCATCTATCGTGATGAATATCCAAGAAATAAATTAATT
CGATGGAATTTTATTCTTGTTTGTTTTCTCGAAGTTGCGTCAGTAATTTTCATCATGTCA
TTCATTTCTGAGCGATTCATGTATCCACTATTTCATGCATTTGGTTCACAATTTTATGAA
GTTGGAAGTAAAGAATTGATGGGATCAATTTTTAATAGCATGTTACCTGGTCTTTTATGT
TTCCTTATTGGATTTTATTGTACTTCATTCATGGATGAATGCATTTGCAGAGTTCCTTAG
ATTTTCTGATCGACAATTTTATCGCGATTGGTGGAATAGTACAAATTTTTCAGTTTATTA
TCGTACATGGAATGTAATTGTGCATGATTGGCTTTATCAGTATGTCTACAGAGACCTTTA
TTTGCACATTTTCAAAAAGAAGCGTGGAATTTGCCAGTTTTTAGTATTCTGCTTATCAGC
AATCTTTCATGAATACATTCTTGGTTTTACCTTCAGATTTTGTTATCCAATTTTATTCGT
AGAATTTCAAGGTGCTGGTGTATTGTTGTTCTTTGCGACAAGAAAAGATATGAAAACAAT
TGGAAATTGCTTCATGTGGATGAGTATTGCTATAGGAATGGGAATATTGCTAAGCTTATA
TCACATGGAATATTATGCACGCCAGAATTGCTCATGGGACAAAGATAAAATTGTCAACTA
TTTTATTCCTATAAGTTGGAGTTGTAATGGATTAAAAATCAGTGAAAATTGGAAGATTCA
ATTTTAA

>g4101.t3 Gene=g4101 Length=159
MKAYAFIRTNVPRALKLGRKRKSSEENSSSDDSIYDSTLPASGSVKVNEKQQLPYFRQYV
YFLFAPTLIYRDEYPRNKLIRWNFILVCFLEVASVIFIMSFISERFMYPLFHAFGSQFYE
VGSKELMGSIFNSMLPGLLCFLIGFYCTSFMDECICRVP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g4101.t3 PANTHER PTHR10408:SF8 O-ACYLTRANSFERASE 1 147 7.6E-36
2 g4101.t3 PANTHER PTHR10408 STEROL O-ACYLTRANSFERASE 1 147 7.6E-36
5 g4101.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 78 -
8 g4101.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 79 102 -
7 g4101.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 103 125 -
9 g4101.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 126 147 -
6 g4101.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 148 159 -
3 g4101.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 80 102 -
4 g4101.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 126 148 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008374 O-acyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed