Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Sterol O-acyltransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g4101 g4101.t4 TTS g4101.t4 30581898 30581898
chr_3 g4101 g4101.t4 isoform g4101.t4 30582564 30583724
chr_3 g4101 g4101.t4 exon g4101.t4.exon1 30582564 30583724
chr_3 g4101 g4101.t4 cds g4101.t4.CDS1 30582564 30583724
chr_3 g4101 g4101.t4 TSS g4101.t4 30583773 30583773

Sequences

>g4101.t4 Gene=g4101 Length=1161
ATGGCAGAAAAAAGAGTTCGTCGTTCAAGTTCAATTATTCAAGATGTCGAGTTAGAAGTG
TTAAAAGAAAACTTAAGAAACAAGCACAAACAGATTGTCGAAGAAGTTGATGAAAAAATT
GATAGAATTTTTGAAGAATTTTTTCATGAAGTTAATAAACTAAGTCTTAATCGATTTGAA
GTTGAAAAGTTATTCAGTGATGGACAAGCAAATAAAAGTAAAAATATAAAACAAAAGAAA
CAAACCAAAAGAATCACGAAAAATGATCAAAACTTACCGGATAAATTACCAGAAAAACAT
TTTCAACCGCGCAATTCATTACTCACTGATCTCTTCGAAATTAAACACGTCAAGACAATT
TATCATATTTTTATCGTTATCTTTAACCTTCTACTTCTAAATGTATTTGTGTCCGATTTC
GTAGATACAGGAAAAATTAATATTGGTTTAGATCCGATTATAACGGGTTTTAAAGGTTTT
AAATATGCCATTTTTATCTGGTGCTGGATGCAATTAACAGTTTTTGGTCTCTATCCTGTT
TTTACAACATGGGCTGCCATGACAAGAAAATATTTTTCAAAGCGAGGATTTCTCACAACA
ATCTGGCATTATTGCGGAGTTATTTCAGTTATTGCATATATTTTTGGCTTCATTACCATT
TACACAAAAGCAGTTGTTCATTTCAATTTAGGACAAGCTAGTTCAGTAGCTGTTTTGATG
GAACTTGTGAGATTTGTAATGAAAGCTTATGCATTTATTCGTACAAATGTACCAAGAGCA
TTAAAATTAGGCAGAAAACGTAAATCATCAGAGGAAAATTCATCATCAGACGATAGCATA
TATGATTCAACATTACCAGCAAGTGGAAGCGTTAAAGTCAATGAAAAACAACAGCTGCCA
TACTTTAGGCAATATGTGTACTTCCTATTTGCACCAACACTCATCTATCGTGATGAATAT
CCAAGAAATAAATTAATTCGATGGAATTTTATTCTTGTTTGTTTTCTCGAAGTTGCGTCA
GTAATTTTCATCATGTCATTCATTTCTGAGCGATTCATGTATCCACTATTTCATGCATTT
GGTTCACAATTTTATGAAGTTGGAAGTAAAGAATTGATGGGATCAATTTTTAATAGCATG
TTACCTGGTCTTTTATGTTTC

>g4101.t4 Gene=g4101 Length=387
MAEKRVRRSSSIIQDVELEVLKENLRNKHKQIVEEVDEKIDRIFEEFFHEVNKLSLNRFE
VEKLFSDGQANKSKNIKQKKQTKRITKNDQNLPDKLPEKHFQPRNSLLTDLFEIKHVKTI
YHIFIVIFNLLLLNVFVSDFVDTGKINIGLDPIITGFKGFKYAIFIWCWMQLTVFGLYPV
FTTWAAMTRKYFSKRGFLTTIWHYCGVISVIAYIFGFITIYTKAVVHFNLGQASSVAVLM
ELVRFVMKAYAFIRTNVPRALKLGRKRKSSEENSSSDDSIYDSTLPASGSVKVNEKQQLP
YFRQYVYFLFAPTLIYRDEYPRNKLIRWNFILVCFLEVASVIFIMSFISERFMYPLFHAF
GSQFYEVGSKELMGSIFNSMLPGLLCF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g4101.t4 Coils Coil Coil 18 42 -
1 g4101.t4 PANTHER PTHR10408:SF8 O-ACYLTRANSFERASE 69 387 2.3E-76
2 g4101.t4 PANTHER PTHR10408 STEROL O-ACYLTRANSFERASE 69 387 2.3E-76
20 g4101.t4 PIRSF PIRSF000439 Oat_ACAT_DAG_ARE 1 387 4.5E-48
11 g4101.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 119 -
19 g4101.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 120 140 -
13 g4101.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 141 159 -
17 g4101.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 160 181 -
10 g4101.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 182 200 -
15 g4101.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 201 221 -
12 g4101.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 222 232 -
16 g4101.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 233 253 -
9 g4101.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 254 324 -
18 g4101.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 325 348 -
14 g4101.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 349 387 -
4 g4101.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 119 141 -
7 g4101.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 163 185 -
5 g4101.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 198 220 -
6 g4101.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 224 246 -
3 g4101.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 325 347 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008374 O-acyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed