Gene loci information

Transcript annotation

  • This transcript has been annotated as Wee1-like protein kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g4115 g4115.t1 TSS g4115.t1 30718307 30718307
chr_3 g4115 g4115.t1 isoform g4115.t1 30718385 30720508
chr_3 g4115 g4115.t1 exon g4115.t1.exon1 30718385 30718551
chr_3 g4115 g4115.t1 cds g4115.t1.CDS1 30718385 30718551
chr_3 g4115 g4115.t1 exon g4115.t1.exon2 30718617 30718837
chr_3 g4115 g4115.t1 cds g4115.t1.CDS2 30718617 30718837
chr_3 g4115 g4115.t1 exon g4115.t1.exon3 30718904 30719621
chr_3 g4115 g4115.t1 cds g4115.t1.CDS3 30718904 30719621
chr_3 g4115 g4115.t1 exon g4115.t1.exon4 30719740 30719960
chr_3 g4115 g4115.t1 cds g4115.t1.CDS4 30719740 30719960
chr_3 g4115 g4115.t1 exon g4115.t1.exon5 30720032 30720343
chr_3 g4115 g4115.t1 cds g4115.t1.CDS5 30720032 30720343
chr_3 g4115 g4115.t1 exon g4115.t1.exon6 30720402 30720508
chr_3 g4115 g4115.t1 cds g4115.t1.CDS6 30720402 30720508
chr_3 g4115 g4115.t1 TTS g4115.t1 30720923 30720923

Sequences

>g4115.t1 Gene=g4115 Length=1746
ATGGATACAGAAAGTAGCGATTTTGATTCTCCGGATATGAATTCAAGTTTGGAACGACAG
TCATCTCCAGAGAGAATGGTTCAGCCGCGAAAATTAAAATTTTCTCCAAAGAGTCCTCAT
AAACTTCAACAATTTTCACCGGATATAAACAGAATTAAGGCATTACGTCTTTTTGATTCT
CCAAGAACGCCTAAATCTCTAATGTCAACAAAATTTCAAAAATACATGTCTACAAATAAT
GAACAGCAACATGATGAAAATAATTATGAAGTGATTGAACGACCAAAGCCTGAAATTCCT
CCTTTTATGCATATAAATGTCAACAACAATAATCATATTTCAAAACCAAAGCCGTTTCCA
CTTTATAAACAATTACATGAAAACTTATCTGCAAATATCAATCCATTTACACCGCCAGGA
ATATCATTACGCAAGAAAAGAGCTCGATTTGAAGGAGATTTTCTTAATTCTACTATGCCT
ATTATCAGTAACAATTCGATAAAACCAAATAATTTAAATGCAAACAAATGGCTGCATCAT
TGTAATAATAATAAGGAACAAATAATTAATCCATTGAATGCAACGACTGCATGTGATTCT
TTTGAGCTGTGCTATGATGAGGAGCTAAATGAGTTTAGGCAAGCGCCAAAACGACTTGCC
TTACAAGAATCTAATATTACACGATATGAGAAGGAGTTCGTTGAATTGAAATTATTGGGT
GTTGGGGAATTTGGTTTAGTTTATCAGTGCCTTAATCGTTTAGATGGCTGTATTTATGCT
ATTAAAAGAAGCATTAAACCAGTCGCGGGTAGTTCGTTTGAAAAAATATCATTGAACGAA
GTTTATGCGCATGCTGTTCTAGGCAAGCATGATAATGTCGTTAGATATTATTCAGCATGG
GCCGAAAATAATCATATGTTAATTCAAAATGAGTATTGTAATGGAGGAAGCTTACAAAGT
CTCTTACAAAAGAGAAATCTAAATGAAGCTGAATTGAAAATACTCCTATTACAAATTGCC
GAAGGATTAAAATATATTCATTCACATAATCTCGTTCATATGGACATTAAAGCAGGAAAT
ATATTTATTGCAAAGCCACAAGTCAAACCAACTCAAGGTGATGATGGATTTGATGAGAAC
TACGATCTATTAGATAATTATCAGGCAGTTACATATAAAATAGGTGATTTAGGTCATGTC
ACTTCAATTTCCGAGCCGCAAGTTGAAGAAGGTGATTGTAGATATTTGGCAGCTGAACTT
CTTCAAGATGACTACTCAAATTTGCCAAAAGCAGATATATTTTCTCTTGGAATTACAATA
TATGAAGCTGGCGGTGGTAAACCATTACCAAAAAATGGAGAATTATGGCATCAATTGCGA
AATGGAAATGTTCCCGATTTGAAAGGAATAAGTCGCGAGTTTAATGATTTAATAAAATTG
ATGACTCATCCGAATCCAGAAGAACGTCCTTCGTCTACGTCTATTTTTAATCATTCCGTT
TTATGTCCTGCTGTGAATAAATCAAAAGCTCAACTATTACATGAACTAAATCTTGAACGA
CAAAAGAACGAGATGCTAATCAAAAAGTTGCGTGAAAGTAACAAGCTCGTTAAATCATAT
GAGCTTGCACAAACGCCTGTAAACAACAAAAAACCGCGAACAAGTTCACGAAATGAGCCA
ATTATCTCAGACAGAAAATTACGCTCAGGATCAAAAGTAAGACGAACGCAACGACGATTA
AAATGA

>g4115.t1 Gene=g4115 Length=581
MDTESSDFDSPDMNSSLERQSSPERMVQPRKLKFSPKSPHKLQQFSPDINRIKALRLFDS
PRTPKSLMSTKFQKYMSTNNEQQHDENNYEVIERPKPEIPPFMHINVNNNNHISKPKPFP
LYKQLHENLSANINPFTPPGISLRKKRARFEGDFLNSTMPIISNNSIKPNNLNANKWLHH
CNNNKEQIINPLNATTACDSFELCYDEELNEFRQAPKRLALQESNITRYEKEFVELKLLG
VGEFGLVYQCLNRLDGCIYAIKRSIKPVAGSSFEKISLNEVYAHAVLGKHDNVVRYYSAW
AENNHMLIQNEYCNGGSLQSLLQKRNLNEAELKILLLQIAEGLKYIHSHNLVHMDIKAGN
IFIAKPQVKPTQGDDGFDENYDLLDNYQAVTYKIGDLGHVTSISEPQVEEGDCRYLAAEL
LQDDYSNLPKADIFSLGITIYEAGGGKPLPKNGELWHQLRNGNVPDLKGISREFNDLIKL
MTHPNPEERPSSTSIFNHSVLCPAVNKSKAQLLHELNLERQKNEMLIKKLRESNKLVKSY
ELAQTPVNNKKPRTSSRNEPIISDRKLRSGSKVRRTQRRLK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g4115.t1 Coils Coil Coil 513 533 -
5 g4115.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 223 311 1.8E-27
6 g4115.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 312 505 1.5E-48
15 g4115.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 41 -
13 g4115.t1 MobiDBLite mobidb-lite consensus disorder prediction 8 23 -
12 g4115.t1 MobiDBLite mobidb-lite consensus disorder prediction 541 581 -
14 g4115.t1 MobiDBLite mobidb-lite consensus disorder prediction 541 556 -
2 g4115.t1 PANTHER PTHR11042 EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 26 570 1.1E-140
3 g4115.t1 PANTHER PTHR11042:SF75 WEE1-LIKE PROTEIN KINASE 2 26 570 1.1E-140
8 g4115.t1 PIRSF PIRSF037281 Wee1_like_PK 1 575 2.9E-182
1 g4115.t1 Pfam PF00069 Protein kinase domain 234 500 1.6E-53
11 g4115.t1 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 239 262 -
10 g4115.t1 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 351 363 -
16 g4115.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 233 501 38.563
9 g4115.t1 SMART SM00220 serkin_6 233 501 4.4E-40
4 g4115.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 218 517 1.26E-58

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0005634 nucleus CC
GO:0000278 mitotic cell cycle BP
GO:0005524 ATP binding MF
GO:0004715 non-membrane spanning protein tyrosine kinase activity MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values