Gene loci information

Transcript annotation

  • This transcript has been annotated as Wee1-like protein kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g4115 g4115.t4 TSS g4115.t4 30718307 30718307
chr_3 g4115 g4115.t4 isoform g4115.t4 30718385 30721406
chr_3 g4115 g4115.t4 exon g4115.t4.exon1 30718385 30721406
chr_3 g4115 g4115.t4 cds g4115.t4.CDS1 30718990 30719625
chr_3 g4115 g4115.t4 TTS g4115.t4 NA NA

Sequences

>g4115.t4 Gene=g4115 Length=3022
ATGGATACAGAAAGTAGCGATTTTGATTCTCCGGATATGAATTCAAGTTTGGAACGACAG
TCATCTCCAGAGAGAATGGTTCAGCCGCGAAAATTAAAATTTTCTCCAAAGAGTCCTCAT
AAACTTCAACAATTTTCACCGGATATAAACAGAATTAAGGCATTACGGTAATATAAATGA
TTCAAAATATCAAGTTTCAATTGTAAAATAATTATTAATTTTGTCATTACAGTCTTTTTG
ATTCTCCAAGAACGCCTAAATCTCTAATGTCAACAAAATTTCAAAAATACATGTCTACAA
ATAATGAACAGCAACATGATGAAAATAATTATGAAGTGATTGAACGACCAAAGCCTGAAA
TTCCTCCTTTTATGCATATAAATGTCAACAACAATAATCATATTTCAAAACCAAAGCCGT
TTCCACTTTATAAACAATTACATGAAAACTTATGTAAGTTGGAAAACATTTATAGTCAAA
AGATCCAGGATAACATAATTTTTCTTATATAATTTTTAGCTGCAAATATCAATCCATTTA
CACCGCCAGGAATATCATTACGCAAGAAAAGAGCTCGATTTGAAGGAGATTTTCTTAATT
CTACTATGCCTATTATCAGTAACAATTCGATAAAACCAAATAATTTAAATGCAAACAAAT
GGCTGCATCATTGTAATAATAATAAGGAACAAATAATTAATCCATTGAATGCAACGACTG
CATGTGATTCTTTTGAGCTGTGCTATGATGAGGAGCTAAATGAGTTTAGGCAAGCGCCAA
AACGACTTGCCTTACAAGAATCTAATATTACACGATATGAGAAGGAGTTCGTTGAATTGA
AATTATTGGGTGTTGGGGAATTTGGTTTAGTTTATCAGTGCCTTAATCGTTTAGATGGCT
GTATTTATGCTATTAAAAGAAGCATTAAACCAGTCGCGGGTAGTTCGTTTGAAAAAATAT
CATTGAACGAAGTTTATGCGCATGCTGTTCTAGGCAAGCATGATAATGTCGTTAGATATT
ATTCAGCATGGGCCGAAAATAATCATATGTTAATTCAAAATGAGTATTGTAATGGAGGAA
GCTTACAAAGTCTCTTACAAAAGAGAAATCTAAATGAAGCTGAATTGAAAATACTCCTAT
TACAAATTGCCGAAGGATTAAAATATATTCATTCACATAATCTCGTTCATATGGACATTA
AAGCAGGAAATATATTTATTGCAAAGCCACAAGTCAAGTAAGTATCATTTCGAATTTTGT
AAATGTCACGAACGAATGTGACATGAAAGTTGTTCACCAAAAAATACACCATTTTCGTTT
TTTTCTTTCTTCTTTTAAATTCAAAATGTGTTTAGACCAACTCAAGGTGATGATGGATTT
GATGAGAACTACGATCTATTAGATAATTATCAGGCAGTTACATATAAAATAGGTGATTTA
GGTCATGTCACTTCAATTTCCGAGCCGCAAGTTGAAGAAGGTGATTGTAGATATTTGGCA
GCTGAACTTCTTCAAGATGACTACTCAAATTTGCCAAAAGCAGATATATTTTCTCTTGGA
ATTACAATATATGAAGGTAAATTATTATGAATGAATTGATGCCAAATTGATCATATTCAT
ATATATTATTTATATATATAACATTAGCTGGCGGTGGTAAACCATTACCAAAAAATGGAG
AATTATGGCATCAATTGCGAAATGGAAATGTTCCCGATTTGAAAGGAATAAGTCGCGAGT
TTAATGATTTAATAAAATTGATGACTCATCCGAATCCAGAAGAACGTCCTTCGTCTACGT
CTATTTTTAATCATTCCGTTTTATGTCCTGCTGTGAATAAATCAAAAGCTCAACTATTAC
ATGAACTAAATCTTGAACGACAAAAGAACGAGATGCTAATCAAAAAGTTGCGTGAAAGTA
ACAAGCTCGTTAAATCATATGAGCTTGCACAAACGCCTGGTAAGAAAGAATTACACTTTC
AAAAATTGCAATCTAATGATTTACTCTTTTTTTATAGTAAACAACAAAAAACCGCGAACA
AGTTCACGAAATGAGCCAATTATCTCAGACAGAAAATTACGCTCAGGATCAAAAGTAAGA
CGAACGCAACGACGATTAAAATGAGCATTTTTATTTTATCTATTATTATATTATATCTCA
TATACATCAGCAAAACAACTCTATAGCAACTAATCATTCAGTATACGTTCAATTGTCTAA
ATTTCTATTTAAATCATAAAATGTAATAATCGAATTTACAATTTGTCTCCATGCCACTTT
TTATTCTAATTTTATTAATTATGATTCTGTCTTGTAATTTTTTCGACATATCACATTTAT
ATATATATATATTATATTTTTGTCATGTCATCTTTTCCCTTTTAATTAAATTTTTATACT
TATAAATTTTACACCGAAAAATAAGAAAATAATGATGAATGCATAAGTCAAGAGTAAAAG
AGAAATGTGAAAATATTTGTTGATATATTTAAGAAATAAAGGAAGATGAGTTTCAAATAA
TTATTTAGTGAGTAAGAAAAGAAAATAGATCAGTTTTAATGAATAACGATGACTGAACGG
AAACATGAGAAACACAATTATTTGAGATTAACATTTTATTTTTAGATATCAAAAAAAATT
TCTTTCGTTTGTTGTATTTTTTTTAGAGTAAAAAACTTTATTTGATGTATCAATTTTTAA
ACAACTTTCAATCACTAACGAATGTAGATTGATTGAAGACTCATTGAATGCGATGAAAGA
AAGAGGAAAACTTATCACTTACGACTGAAAATCGGTTTTCTTCTTTTCTCAACCGTTATG
ATTTATTTTTCTGGTCACACACAGTTTAATTTTCTTAAATAAAGCTATTAAAAATCAATC
AATTTTTTATTACAAAAAATTTGATTCACTAGTAAAATAATTTATAATGTACGAAAATAG
CTTTATTCAGGGGTCTCATTAAAACTAAATCGCAACCGTTGAGAGATAATTTTCTTTTCT
TCCTTCAAGTTTAAACTTCGCG

>g4115.t4 Gene=g4115 Length=211
MPIISNNSIKPNNLNANKWLHHCNNNKEQIINPLNATTACDSFELCYDEELNEFRQAPKR
LALQESNITRYEKEFVELKLLGVGEFGLVYQCLNRLDGCIYAIKRSIKPVAGSSFEKISL
NEVYAHAVLGKHDNVVRYYSAWAENNHMLIQNEYCNGGSLQSLLQKRNLNEAELKILLLQ
IAEGLKYIHSHNLVHMDIKAGNIFIAKPQVK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g4115.t4 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 64 153 2.7E-28
9 g4115.t4 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 154 211 5.5E-16
2 g4115.t4 PANTHER PTHR11042 EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 46 208 2.4E-71
3 g4115.t4 PANTHER PTHR11042:SF75 WEE1-LIKE PROTEIN KINASE 2 46 208 2.4E-71
1 g4115.t4 Pfam PF00069 Protein kinase domain 76 210 8.2E-37
7 g4115.t4 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 81 104 -
6 g4115.t4 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 193 205 -
10 g4115.t4 ProSiteProfiles PS50011 Protein kinase domain profile. 75 211 26.789
5 g4115.t4 SMART SM00220 serkin_6 75 210 1.9E-7
4 g4115.t4 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 59 208 3.01E-40

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values