General information for g4117.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cell division control protein 45-like protein.
Parent gene
- The parent gene g4117 is located on chr_3: 30725441..30726196 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4117 | g4117.t2 | TTS | g4117.t2 | 30723645 | 30723645 |
| chr_3 | g4117 | g4117.t2 | isoform | g4117.t2 | 30723851 | 30725639 |
| chr_3 | g4117 | g4117.t2 | exon | g4117.t2.exon1 | 30723851 | 30725239 |
| chr_3 | g4117 | g4117.t2 | cds | g4117.t2.CDS1 | 30723851 | 30725239 |
| chr_3 | g4117 | g4117.t2 | exon | g4117.t2.exon2 | 30725298 | 30725377 |
| chr_3 | g4117 | g4117.t2 | cds | g4117.t2.CDS2 | 30725298 | 30725377 |
| chr_3 | g4117 | g4117.t2 | exon | g4117.t2.exon3 | 30725441 | 30725639 |
| chr_3 | g4117 | g4117.t2 | cds | g4117.t2.CDS3 | 30725441 | 30725639 |
| chr_3 | g4117 | g4117.t2 | TSS | g4117.t2 | 30725762 | 30725762 |
Sequences
>g4117.t2 Gene=g4117 Length=1668
ATGTTTGTGTCTGATTTAAGGAACGAATTCTTCAATTTTTTATCGGGAAAGCGCGTAATT
ATAATTTCAAATATTGACATCGACTCGATAGCTGCAAGTAAAATACTTCAAACACTTTTT
CGTAACGAAAATGTTATATTCTCTATAACACCAGTAATTGGTTTAAAAGCATTAAAGCGG
ACATTTGATGATAACAAGACTCCTGAAGAAGATACAATTTTTTTCCTTGTCGATTCTCAT
AGACCTTTGGATTTGTGTAACATTTATAGTGATTCTCAAGTGAGAATTCTTGGTGATCAC
AGAAATGAAGAAGATATTCCAGCTTTTGATCAAATATTTCGTGATTCTGATGATTCAGAA
GCAAGTGGCGATGAACAAGAAGAAAATGTTGAAGAGGACGGTGGCTTAGGCGAAGATGAT
GATGATAATCCAGATAGAGACTCTTCTTCAATTCGTAGATCAGAAACACATTTAGAAAAA
TTTGAACGTAGATTAAGGCGAAATAGAGAGAAACGTGATTGGGAAAAGACAAGAGAGCGA
GTGTTATTTGACTATTCACAATATAGCTATTATGCAAGAAGTTCTGCTTTAGTGTTATAC
GAATTAGCATGGCAAATGTCAAAAGACACACTTGATCTCCTTTGGTGGTCAATTGTTGGT
ATCACAGAACAATTATTGCTAGGAAAAATTGAAAGTTCAACATATACACTAGAGACACAA
AAAATTCAATCTCATGTATCACGTTTGTCAAACAAAATCAATGGAAAATCAAGTACAGCT
GTTCGAGTGACTTTTGAAAATGATTTATATTTAGCACTTTATAGACATTGGAGTGTAAAA
GAATCATTAAACAATTCCATATATTCAGCTTGCAGATTAAAATTATGGACATTGAATGGA
AAGAAAAAACTTAATGAGCTACTTGTTGAAATGGGATTACCACTTGCTCAAGCTAGTCAG
CAATTTACTTCAATGGATTTGTTAATGAAAAAAGATTTTTATCAAATGATTGAAAGAACT
GCCGAAAAATACAATATGCCTGGTATAATTTACGGTTCATTTACACTTCAATATGGTTAT
CGACACCGTTTTGCAGCTGCTGATTATGTTTATTCAATGATTGCAATGATAGAACAAATT
GAAAATGAAAGAACTGCAGAATATTGTTTCATTGAAGCTCTCGAAAGTCTCTCTCGTGTT
AACAAAGATTTAATCGAAAGTGGAATTGATAAAGCAAAAGTCCTTCTTGATGCAATATTT
AAACAAGTAAAAACTTCATTAGAGAGTAATCAAATTTATTCAGCTGGTCCGTTTCTCTAT
TTCATCATGCAAGATGAAAATATTCTTTTCTCATCACCATATGGCCTGACGTTGCTTGCT
AAGTTTATGCTGAATGCATACGTTGCAGTTTCAAAAAGTCGTAGGGCGAGAGAGTCACCG
CTTATCGCATGCATACCAATTGATATCACTCGAGAAATTTGTCTATTAATTGGAATTCCT
CCAATTGGAGATGAAACGAAAAATTTCTTTGGAAAGGCTTTTGAACAAGCTGCAGTAAAA
AGCAATGCAGCTATTGCACAAGACTTTTTTGATACAAATATTATTCAAATTAAACAATCA
GACTGCGCAAAATTTATCGATGCCTTAACAGTGCTATTGTCGAGATAA
>g4117.t2 Gene=g4117 Length=555
MFVSDLRNEFFNFLSGKRVIIISNIDIDSIAASKILQTLFRNENVIFSITPVIGLKALKR
TFDDNKTPEEDTIFFLVDSHRPLDLCNIYSDSQVRILGDHRNEEDIPAFDQIFRDSDDSE
ASGDEQEENVEEDGGLGEDDDDNPDRDSSSIRRSETHLEKFERRLRRNREKRDWEKTRER
VLFDYSQYSYYARSSALVLYELAWQMSKDTLDLLWWSIVGITEQLLLGKIESSTYTLETQ
KIQSHVSRLSNKINGKSSTAVRVTFENDLYLALYRHWSVKESLNNSIYSACRLKLWTLNG
KKKLNELLVEMGLPLAQASQQFTSMDLLMKKDFYQMIERTAEKYNMPGIIYGSFTLQYGY
RHRFAAADYVYSMIAMIEQIENERTAEYCFIEALESLSRVNKDLIESGIDKAKVLLDAIF
KQVKTSLESNQIYSAGPFLYFIMQDENILFSSPYGLTLLAKFMLNAYVAVSKSRRARESP
LIACIPIDITREICLLIGIPPIGDETKNFFGKAFEQAAVKSNAAIAQDFFDTNIIQIKQS
DCAKFIDALTVLLSR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g4117.t2 | Coils | Coil | Coil | 151 | 171 | - |
| 6 | g4117.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 153 | - |
| 7 | g4117.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 144 | - |
| 4 | g4117.t2 | PANTHER | PTHR10507:SF0 | CELL DIVISION CONTROL PROTEIN 45 HOMOLOG | 1 | 550 | 1.8E-137 |
| 5 | g4117.t2 | PANTHER | PTHR10507 | CDC45-RELATED PROTEIN | 1 | 550 | 1.8E-137 |
| 2 | g4117.t2 | Pfam | PF02724 | CDC45-like protein | 19 | 70 | 4.7E-9 |
| 1 | g4117.t2 | Pfam | PF02724 | CDC45-like protein | 69 | 381 | 5.0E-72 |
| 3 | g4117.t2 | Pfam | PF02724 | CDC45-like protein | 381 | 550 | 5.6E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006270 | DNA replication initiation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
