General information for g4117.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cell division control protein 45-like protein.
Parent gene
- The parent gene g4117 is located on chr_3: 30725441..30726196 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4117 | g4117.t3 | TTS | g4117.t3 | 30723645 | 30723645 |
| chr_3 | g4117 | g4117.t3 | isoform | g4117.t3 | 30723851 | 30725763 |
| chr_3 | g4117 | g4117.t3 | exon | g4117.t3.exon1 | 30723851 | 30725239 |
| chr_3 | g4117 | g4117.t3 | cds | g4117.t3.CDS1 | 30723851 | 30724903 |
| chr_3 | g4117 | g4117.t3 | exon | g4117.t3.exon2 | 30725298 | 30725619 |
| chr_3 | g4117 | g4117.t3 | exon | g4117.t3.exon3 | 30725678 | 30725763 |
| chr_3 | g4117 | g4117.t3 | TSS | g4117.t3 | 30725762 | 30725762 |
Sequences
>g4117.t3 Gene=g4117 Length=1797
TGTGTCAAAAAATAACCGCCAAAATCGAAAAATTAATATTAAAGTTTCTTTTATTAAATT
AATTAATTTTCTCGTGAATTAAAATTGAACGAATTCTTCAATTTTTTATCGGGAAAGCGC
GTAATTATAATTTCAAATATTGACATCGACTCGATAGCTGCAAGTAAAATACTTCAAACA
CTTTTTCGTAACGAAAATGTTATATTCTCTATAACACCAGTAATTGGTTTAAAAGCATTA
AAGCGGACATTTGATGATAACAAGAGTGATTGCAATATATTCGTTTTAATTAATTGTGGC
GGTTGTATTGATCTTCTTGACTTTCTAGCTCCTGAAGAAGATACAATTTTTTTCCTTGTC
GATTCTCATAGACCTTTGGATTTGTGTAACATTTATAGTGATTCTCAAGTGAGAATTCTT
GGTGATCACAGAAATGAAGAAGATATTCCAGCTTTTGATCAAATATTTCGTGATTCTGAT
GATTCAGAAGCAAGTGGCGATGAACAAGAAGAAAATGTTGAAGAGGACGGTGGCTTAGGC
GAAGATGATGATGATAATCCAGATAGAGACTCTTCTTCAATTCGTAGATCAGAAACACAT
TTAGAAAAATTTGAACGTAGATTAAGGCGAAATAGAGAGAAACGTGATTGGGAAAAGACA
AGAGAGCGAGTGTTATTTGACTATTCACAATATAGCTATTATGCAAGAAGTTCTGCTTTA
GTGTTATACGAATTAGCATGGCAAATGTCAAAAGACACACTTGATCTCCTTTGGTGGTCA
ATTGTTGGTATCACAGAACAATTATTGCTAGGAAAAATTGAAAGTTCAACATATACACTA
GAGACACAAAAAATTCAATCTCATGTATCACGTTTGTCAAACAAAATCAATGGAAAATCA
AGTACAGCTGTTCGAGTGACTTTTGAAAATGATTTATATTTAGCACTTTATAGACATTGG
AGTGTAAAAGAATCATTAAACAATTCCATATATTCAGCTTGCAGATTAAAATTATGGACA
TTGAATGGAAAGAAAAAACTTAATGAGCTACTTGTTGAAATGGGATTACCACTTGCTCAA
GCTAGTCAGCAATTTACTTCAATGGATTTGTTAATGAAAAAAGATTTTTATCAAATGATT
GAAAGAACTGCCGAAAAATACAATATGCCTGGTATAATTTACGGTTCATTTACACTTCAA
TATGGTTATCGACACCGTTTTGCAGCTGCTGATTATGTTTATTCAATGATTGCAATGATA
GAACAAATTGAAAATGAAAGAACTGCAGAATATTGTTTCATTGAAGCTCTCGAAAGTCTC
TCTCGTGTTAACAAAGATTTAATCGAAAGTGGAATTGATAAAGCAAAAGTCCTTCTTGAT
GCAATATTTAAACAAGTAAAAACTTCATTAGAGAGTAATCAAATTTATTCAGCTGGTCCG
TTTCTCTATTTCATCATGCAAGATGAAAATATTCTTTTCTCATCACCATATGGCCTGACG
TTGCTTGCTAAGTTTATGCTGAATGCATACGTTGCAGTTTCAAAAAGTCGTAGGGCGAGA
GAGTCACCGCTTATCGCATGCATACCAATTGATATCACTCGAGAAATTTGTCTATTAATT
GGAATTCCTCCAATTGGAGATGAAACGAAAAATTTCTTTGGAAAGGCTTTTGAACAAGCT
GCAGTAAAAAGCAATGCAGCTATTGCACAAGACTTTTTTGATACAAATATTATTCAAATT
AAACAATCAGACTGCGCAAAATTTATCGATGCCTTAACAGTGCTATTGTCGAGATAA
>g4117.t3 Gene=g4117 Length=350
MSKDTLDLLWWSIVGITEQLLLGKIESSTYTLETQKIQSHVSRLSNKINGKSSTAVRVTF
ENDLYLALYRHWSVKESLNNSIYSACRLKLWTLNGKKKLNELLVEMGLPLAQASQQFTSM
DLLMKKDFYQMIERTAEKYNMPGIIYGSFTLQYGYRHRFAAADYVYSMIAMIEQIENERT
AEYCFIEALESLSRVNKDLIESGIDKAKVLLDAIFKQVKTSLESNQIYSAGPFLYFIMQD
ENILFSSPYGLTLLAKFMLNAYVAVSKSRRARESPLIACIPIDITREICLLIGIPPIGDE
TKNFFGKAFEQAAVKSNAAIAQDFFDTNIIQIKQSDCAKFIDALTVLLSR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g4117.t3 | PANTHER | PTHR10507:SF0 | CELL DIVISION CONTROL PROTEIN 45 HOMOLOG | 1 | 345 | 0 |
| 4 | g4117.t3 | PANTHER | PTHR10507 | CDC45-RELATED PROTEIN | 1 | 345 | 0 |
| 1 | g4117.t3 | Pfam | PF02724 | CDC45-like protein | 2 | 176 | 0 |
| 2 | g4117.t3 | Pfam | PF02724 | CDC45-like protein | 176 | 345 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006270 | DNA replication initiation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
