Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Aldehyde dehydrogenase family 2 member B7, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g4122 g4122.t4 isoform g4122.t4 30743094 30745693
chr_3 g4122 g4122.t4 exon g4122.t4.exon1 30743094 30743220
chr_3 g4122 g4122.t4 cds g4122.t4.CDS1 30743095 30743220
chr_3 g4122 g4122.t4 exon g4122.t4.exon2 30744420 30744541
chr_3 g4122 g4122.t4 cds g4122.t4.CDS2 30744420 30744541
chr_3 g4122 g4122.t4 exon g4122.t4.exon3 30744768 30745693
chr_3 g4122 g4122.t4 cds g4122.t4.CDS3 30744768 30745017
chr_3 g4122 g4122.t4 TSS g4122.t4 30745933 30745933
chr_3 g4122 g4122.t4 TTS g4122.t4 NA NA

Sequences

>g4122.t4 Gene=g4122 Length=1175
ATGGAAACTCCAAAAAATCCTAATCCAAATCCAGATCAAGAAATTCAGTTCACGAAGGTA
TTAAATTAAATAGATTTTTTTACATTATTTGAATCTTCTTCTTTTTAACTCAGCTTTTTA
TCAACAATGAATTCGTTGATTCAATCAGTAAAAAGACTTTTGCTACAATTAACCCAGCAA
ATGGCAAAAAAATCGCTGACATCGCTGAAGCTGATAAGGCTGATGTCGATTTAGCAGTTA
AAGCTGCACAAAAAGCATTCGAACGTGGCTCTGAATGGCGAAATTTAGATGCTTCAGCTC
GTGGAAGATTACTTTATCGGTAAATGAAAGAAAATTATTTTAATTTTAATATGTGTTGAT
TTTTTATTTTACAGTTTAGCGGACCTAATTGACCGTGATTCAGCTATTCTCTCCAATTTG
GAAACATTAGACAATGGAAAACCTTATGAAGATGCATGTCTGGATGTTTTGTTTAGTGGT
GAATTTTTACGGTGAATAAATTCTAGATTTGACTTTTTATAATCTGTCTTAACGTCTACG
TTTTATTAGTTATTATGCGGGATTATGTGACAAAATTCATGGCAGAACTGTTCCAAGTGA
TGGCAATCTTTTTAGTTATGTTCGCAAAGAACCAATTGGTGTAGTAGGCCAAATTATACC
TTGGAATTATCCTCTTATGATGGTAAGCTGGAAATGGGCACCGGCTTTAGCTGCTGGATG
CACAATAGTACTTAAACCAGCAGAACAAACTCCCCTTTCGGCTTTATATGTCGCAAATCT
CGCGAAAGAAGCGGGTTTTCCTGCTGGCGTAGTTAACGTAATTACTGGCTATGGGCCAAC
TGTTGGTGCCGCTATTGCATCACATCCTGATATTCGCAAGGTTGCATTTACAGGCTCAAC
TGAAGTTGGAAAATTAATTATGGAAGTTGATGAAGCAGTTGATATTGCTCATAATGCAAT
ATTTGCAAACCATGGTCAAAACTGTTGTGCTGGTTCTCGTACATTCGTTCATGAGAAAAT
TTATGATGAATTTGTAGAAAAAGCAGCTTTATGTTTTCTAAAATTTACTAATAAAAAGAA
AACTTTATGTGGTAAGCTTTCAGGATTTATGTTGTCTATTTTATTTAAGCTTTTTCTGAA
GATATCAGTTTATGAAATGAAATTTTATAGAATAC

>g4122.t4 Gene=g4122 Length=166
MMVSWKWAPALAAGCTIVLKPAEQTPLSALYVANLAKEAGFPAGVVNVITGYGPTVGAAI
ASHPDIRKVAFTGSTEVGKLIMEVDEAVDIAHNAIFANHGQNCCAGSRTFVHEKIYDEFV
EKAALCFLKFTNKKKTLCGKLSGFMLSILFKLFLKISVYEMKFYRI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g4122.t4 Gene3D G3DSA:3.40.605.10 Aldehyde Dehydrogenase; Chain A 1 84 2.7E-39
10 g4122.t4 Gene3D G3DSA:3.40.309.10 Aldehyde Dehydrogenase; Chain A 85 140 6.9E-12
3 g4122.t4 PANTHER PTHR11699:SF269 ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL-LIKE PROTEIN 1 83 3.1E-59
5 g4122.t4 PANTHER PTHR11699 ALDEHYDE DEHYDROGENASE-RELATED 1 83 3.1E-59
2 g4122.t4 PANTHER PTHR11699:SF269 ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL-LIKE PROTEIN 83 124 3.1E-59
4 g4122.t4 PANTHER PTHR11699 ALDEHYDE DEHYDROGENASE-RELATED 83 124 3.1E-59
1 g4122.t4 Pfam PF00171 Aldehyde dehydrogenase family 1 83 6.6E-36
12 g4122.t4 Phobius SIGNAL_PEPTIDE Signal peptide region 1 24 -
13 g4122.t4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 7 -
14 g4122.t4 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 8 19 -
15 g4122.t4 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 20 24 -
11 g4122.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 25 166 -
7 g4122.t4 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 96 107 -
6 g4122.t4 SUPERFAMILY SSF53720 ALDH-like 1 124 5.89E-48
8 g4122.t4 SignalP_EUK SignalP-noTM SignalP-noTM 1 12 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed