General information for g4139.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Hormone-sensitive lipase.
Parent gene
- The parent gene g4139 is located on chr_3: 30903266..30903657 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4139 | g4139.t3 | isoform | g4139.t3 | 30901011 | 30901817 |
| chr_3 | g4139 | g4139.t3 | exon | g4139.t3.exon1 | 30901011 | 30901817 |
| chr_3 | g4139 | g4139.t3 | cds | g4139.t3.CDS1 | 30901011 | 30901685 |
| chr_3 | g4139 | g4139.t3 | TSS | g4139.t3 | 30901785 | 30901785 |
| chr_3 | g4139 | g4139.t3 | TTS | g4139.t3 | NA | NA |
Sequences
>g4139.t3 Gene=g4139 Length=807
GGATTTGTAGCACAAAGTTCAAAATCTCATTTAGTATATTTACTTGAGTGGGCAGTAAAT
TTAAATGTTCCAATACTATCGCTTGATTATAGTCTTTCTCCAGAGTTTCCTTATCCTCGA
CCATTAGAAGAAATGTTTTACGCATATTGTTGGGTGTTAAATAATGCTGATAAACTTGGA
AGTACAATAGAAAAAATAATATTTTGTGGAGATTCAGCTGGAGCAAACTTATGTTTAGCT
ACTTTACTAAAGGCAATAGATATGAAAATTCGAAAGCCCGATGGACTTTTTCTTGCTTAT
TGCCCTATTCTCGTTGCCTTCGACCCTTCACCATCCAGACTATTATGTTTAATGGATCCT
TTAATTCCTATGGGGTTCTTAATACGATGCTTAAAGGCTTATAGCAATGCTCAATCGATA
GAAAACAATAATAATGAAGATGCTACTAGTGTTGCATCTAATCTTCAGCAATTAGAAGAA
ATAAAACGTGCCAAAGTCGAACATAATGAGGAATTAAAACGGTCTTCATTAAATGTAGAT
ATAGAACATGAATTCAGTGAAAATTCGGAAAAATCAGATTCATTTGAGGAAATTTCATGC
TTCGAAAGACATCAAACTGATTCAGATATTAAAGCTCATATTTCTCAAGTAAGTGATATA
GCGAGCAATGATACACTTGCTGGCACTTCATTTCTCACAGGAACAGATTTTAAAAACAGC
AGAGATACAATTGAAGTTGTCAGTCCTATTGATAGTATTCAATCAGCTACGTCACTCGAA
GAAGATTCTCTACCAATAACAATTCAT
>g4139.t3 Gene=g4139 Length=225
MFYAYCWVLNNADKLGSTIEKIIFCGDSAGANLCLATLLKAIDMKIRKPDGLFLAYCPIL
VAFDPSPSRLLCLMDPLIPMGFLIRCLKAYSNAQSIENNNNEDATSVASNLQQLEEIKRA
KVEHNEELKRSSLNVDIEHEFSENSEKSDSFEEISCFERHQTDSDIKAHISQVSDIASND
TLAGTSFLTGTDFKNSRDTIEVVSPIDSIQSATSLEEDSLPITIH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4139.t3 | Coils | Coil | Coil | 107 | 134 | - |
| 4 | g4139.t3 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 117 | 2.8E-15 |
| 2 | g4139.t3 | PANTHER | PTHR23025 | TRIACYLGLYCEROL LIPASE | 2 | 140 | 8.0E-36 |
| 1 | g4139.t3 | Pfam | PF07859 | alpha/beta hydrolase fold | 3 | 68 | 3.3E-8 |
| 3 | g4139.t3 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 3 | 111 | 1.29E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
