General information for g4147.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucose:glycoprotein glucosyltransferase.
Parent gene
- The parent gene g4147 is located on chr_3: 30952708..30954007 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4147 | g4147.t1 | TTS | g4147.t1 | 30948674 | 30948674 |
| chr_3 | g4147 | g4147.t1 | isoform | g4147.t1 | 30948882 | 30954007 |
| chr_3 | g4147 | g4147.t1 | exon | g4147.t1.exon1 | 30948882 | 30948916 |
| chr_3 | g4147 | g4147.t1 | cds | g4147.t1.CDS1 | 30948882 | 30948916 |
| chr_3 | g4147 | g4147.t1 | exon | g4147.t1.exon2 | 30949000 | 30949196 |
| chr_3 | g4147 | g4147.t1 | cds | g4147.t1.CDS2 | 30949000 | 30949196 |
| chr_3 | g4147 | g4147.t1 | exon | g4147.t1.exon3 | 30949266 | 30949287 |
| chr_3 | g4147 | g4147.t1 | cds | g4147.t1.CDS3 | 30949266 | 30949287 |
| chr_3 | g4147 | g4147.t1 | exon | g4147.t1.exon4 | 30949357 | 30949398 |
| chr_3 | g4147 | g4147.t1 | cds | g4147.t1.CDS4 | 30949357 | 30949398 |
| chr_3 | g4147 | g4147.t1 | exon | g4147.t1.exon5 | 30949464 | 30949802 |
| chr_3 | g4147 | g4147.t1 | cds | g4147.t1.CDS5 | 30949464 | 30949802 |
| chr_3 | g4147 | g4147.t1 | exon | g4147.t1.exon6 | 30949892 | 30951798 |
| chr_3 | g4147 | g4147.t1 | cds | g4147.t1.CDS6 | 30949892 | 30951798 |
| chr_3 | g4147 | g4147.t1 | exon | g4147.t1.exon7 | 30951872 | 30953911 |
| chr_3 | g4147 | g4147.t1 | cds | g4147.t1.CDS7 | 30951872 | 30953911 |
| chr_3 | g4147 | g4147.t1 | exon | g4147.t1.exon8 | 30954003 | 30954007 |
| chr_3 | g4147 | g4147.t1 | cds | g4147.t1.CDS8 | 30954003 | 30954007 |
| chr_3 | g4147 | g4147.t1 | TSS | g4147.t1 | 30954136 | 30954136 |
Sequences
>g4147.t1 Gene=g4147 Length=4587
ATGAGAATGGGTGTAATTAAATCAATTTTTAGTATAGTGATTTTCATTATTAGTATAAGT
TTATCATATGCAGCAAAAAGCCATCCGATCTCAACTCTAATCAATGCGAAATTTTCATTG
ACACCAGTACAGCTGGAAATATCAGAATATTTGTCAGACAGTTCAAATCAAAAATTCTGG
ATTTTTATAGATGAGCTGACTAAAGTCAATCTTGATGGTTTACAGACAGACCAACAACGT
TATAAAACTGCGATCGATATTGCAGGAAAACATTTAAGTCATGCTCAAATCAAGTTATTG
AAGTTATCATTATCTTTAAGATCACTCACGCCACGCATACAATCACACTTTATGATTGCT
GATGACATTTTAAAGCGTGGTGATTGTGAATATGCTAAAGCATTTGTTATGAGTAGTAAT
GAGTTAATTTGTTCAGTGAATGATTTAAAGAAAAAATTTAAGGATTTCAAACCATCAAAT
GAAAATTCAGACCTGTATAGCTTTGATCACATTTTTCCTGGTACAGAAACTAACAATTTT
GTTAATGTGCTTTATGGAGAAGTCGGCAGTAAGGAATTTAACGAATTTCATAATCTTCTT
AAGACTGAAATTGCAAATGGCAAAAACATTAAATATGTAGCAAGGCATTTTATTCGTCAT
CGTTCTCAAACAAAAGTTCGTCTCAGCGGATATGGTGTCGAATTGCATTTGAAATCAACT
GAATACAAAGCACAAGATGATTCACCAAGGAAAGATAATGAGAAGCTCTTTGAATCGGAT
TCAGAAGATACACAAGTTGAAGGATTTAATTTTAAAAAATTAAAAGAGATTTACCCACAT
TTGTCACATTCTTTAGACAAGATGAGAGCCAGTTTGCTTGAAAAGAATGAAGAGATTTCT
CCTTTAAAAGCTTGGGAATTTCAAGAACTTGGTTTGCAAGCAGCAGCACGTGTAGCTTCC
ATTCAGGGTGAGGAGGCTCTCTCAATTCTTCAATTCACAGCTCAAAATTTTCCTAGTCAA
GCCAAATCTCTCATTCATACTAAAGTAAGTGATGATTTTAAGGCAGAAATGAAAAACAAT
ATTGAAGTTCTTGCAAGAAATTTGAACCTTCAACCACCTGATGCCGCACTCTTTATCAAT
GGTCTTTATTTTGATGCCGAAACTCTTGATGTTGAAACCCTTCTTGATACAATCAAAAAA
GAATCAATGATACTTGATGGATTAAATCAAATTGGATTGAAAGGAAGTGCATCAGCACCA
TTGCTTGCTCTTGATTTTGCATCTCAAGCTAAAGAATTTGCAATTGATATTCGCGATTCA
TCTATCATTTGGATCAACGATTTGGAAGTTGATAAGGAATATAAAAGATGGGGTAGCTCA
GTAATGGACATGTTAAGACCAACTTTTCCAGGTATGATGAGAAGCGTTAGAAAAAACTTT
TTCAACCTTTTATTGGTATTTGATCCTATCAAACCTGAAGCACGTGATATTATCCGCATG
TCTGAAAGTTTCATTGTTAACATGGCCCCAATTCGTCTTGGTTTAGTCTTTGAAACAACA
CGCTCAGTGAATAACGAAGGAGAAACGAATATTGTTTATCGTACCATTAATTGTGCCTTC
AATTACATGCATCAAAAGAAAGGAACACGTGAAGCATTGAGTTTTCTCTTAGATATTTTT
GCGTCGGTAGAAAAGGATAAAGATGTTGATTTAGAGACTATTCGTAAAGTTTTTAAAAAA
ACAAATACAAAGCTAAGCAGTGCAGAAATTGAAGATGTTTTAGGTCAAGATTCAGATTTT
GATTATGGACGACAATTGTCTGAAGAATTTATTGAACGATTGGGCGTAAAAGTAATTCCT
CAGGCGTTGCTTAATGGTGTCCTCTTAAATCAAAAATCACTTAATCGCGATGAATATGAA
GAGCTTATTTTAACAGAAATCATGCAACAGACACCCACACTTCAGAAGGCTATTTATCGT
GGAGAATTAAGTGATGGTGAAAATGTTATTGATTATTTAATGCAACAACCACATGTGATG
CTTAGATTAAATCAAAGAATTTTATCGAACGATAATCCACAAAACTTGGATATGCATAAT
GGCAAAGCATATCCTGATATTGAAGACGTTAAAATTCTTGCAACATTAAATAATGAGGAC
TTAACGGCAACATTATTGAAAAATATACATTATTTTGAACCGAAGAGTTCGGGTGAAAAA
TTTATGAAGAGCAGACTGCATTTTGTCACGATTAAAGTCGTTACTGATTTAAACACGAAA
CGTGGTAAAAATCTTCTCAGAAATGCTCTCGAATATTTAAAGGGAAGCAGTGGAACGCGA
TTAACTTTCATACCAAATGCTGATAAGTCAGAAGCTACTTCGAAAGATGAATATAATTTA
AATGCGATTGTCTGGAGCATTTTAAATACATATGAGGGAAAAGAAGCGACAGAACGTACA
CTTCGTATACTCAATGGAAAAGAAGAAATTTCTGACAGTGTTAAAGGATTCCTTAAAGCA
ACTGAATTGCATCTCAAAATGCTTCGAGTTTATTGTCAACGAGTTCTTAAAATGAAAAGT
AGTGAAACTAGTGTCATTGTTAATGGAAGAATATTTGGACCATTTGAGGATGAGGAAACA
TTTACAGTTGATGATTTCAATTTGATTGAGAAAATCAATCAACAACAGTACATAAATAAA
ATAAAACTCGCTTTCAAATCAATAAAAGTTGAAGATTTTGACCTTGAATTAAGCTCAGAT
TTAATGCTTCGACTTTTGTCACTTTTGATACCACGTCATTCATCAAAAAATCGTTTCAAT
ATTCCTGCAGAATTACGTGAAGATTTCACAGTTGTAAAATTATTACCAAAAGTCAAAAAT
GAGCCAAGTTTTAATTTAGTAGCAGTTGTTGATCCTGCATCACGTGGCGCTCAAAAACTC
TCACCACTTCTCAATTTGCTACGTCAAGTTGTCAATTGTGACTTAAAACTTTTCCTTTGT
GCTGTTGACAAACACTCAGACATGCCTGTGAAAAATTTCTATAGATATGTAATTGAACCA
GAGCTGCAGTTCACAACTGAAGGTAAATTAACAAATGGTCCAGCTGCCAAATTTGTAGGA
TTACCAGCTAAACATTTATTGACACAGAACCTCGCAGTGCCAGAAAATTGGATGGTTGAT
TTAATAAGATCTGTGTATGATTTAGACAATATACGTTTATCAGATATAGGCGGACCTGTT
CATAGTGAATATGAACTTGAATACTTACTTTTAGAGGGACACTGTTTCGATACAACGTCT
GGATCTCCGCCACGTGGTCTGCAATTCATTTTAGGAACAAAAGAACAAGAAGCAGTTGTT
GATACAATTGTGATGGCTAATTTAGGATACTTTCAACTTAAAGCAAATCCTGGTGCATGG
ACATTAAAATTACGGCATGGAAAAAGCTCAGAAATCTACGACATAACAAATGTTGATGGA
TTGAATACAATTCACTCTGTTGAAGATGGTTTTGTATCTGTAGTCGTCAATAGCTTCCGT
TCTCATGTCCTTAAAGTTCGTGTCACAAAAAAGCCAGAGATGCTAAATGTCGACTTATTG
GGTGATAATGATGAGCCATCAAGCGGTATTTGGAACTCAATTACGAGCACATTCAGTGGT
TCAAATGCAGAGTCAAATATTGAAACTATCAACATTTTCTCGGTCGCATCTGGCCATCTT
TATGAACGTCTTTTGCGCATTATGATGCTGTCGTTGTTGAAGCATACAAAATCTCCTGTG
AAATTTTGGTTCTTGAAAAACTATTTATCGCCACAATTCAAAGATTTCCTACCAGCAATG
AGCCGTGAATATAATTTTGACTATGAACTAGTGCAATATAAATGGCCCAGATGGCTTCAT
CAACAAACTGAAAAACAAAGAACAATCTGGGGATATAAAATTCTGTTTTTAGATGTTCTA
TTTCCTCTGAATGTAAAGAAGATTATTTTTGTTGATGCGGATCAAATTGTGAGAGCAGAC
ATGAAGGAACTTTATGAAATGGATTTGAATGGTGCACCATATGGCTACGTACCATTTTGT
GACTCGCGAAAAGAAATGGATGGTTTCCGATTTTGGAATTCAGGTTATTGGAGGAATCAT
TTACAAGGTCGCAAATACCATATTTCTGCACTATATGTTGTGGATTTGAAAAGATTTAGA
AAAATTGCTGCCGGTGATAGATTAAGAGGACAATATCAAGCTTTAAGTCAAGATCCTAAT
TCTCTTAGTAACCTTGATCAAGATTTGCCTAATAATATGGTTCATCAAGTTCAGATTAAA
TCTCTTCCACAAGAGTGGTTATGGTGTGAGACTTGGTGTAGCGATGATGGATTGAAACAT
GCCAAAACAATTGATTTATGTAATAATCCTTTGACAAAAGAAGCTAAATTAACGGCAGCT
CAAAGAATTGTACCAGAATGGAAAGATTATGATAATGAAATAAAAAACCTAATGGCACGA
ATTGATGATGACGAACATCAAGAGCATGTTACAATTCACAAACAATATGATGAGAAAACA
CCAAATGAGAAGCACATCGAGCTGTGA
>g4147.t1 Gene=g4147 Length=1528
MRMGVIKSIFSIVIFIISISLSYAAKSHPISTLINAKFSLTPVQLEISEYLSDSSNQKFW
IFIDELTKVNLDGLQTDQQRYKTAIDIAGKHLSHAQIKLLKLSLSLRSLTPRIQSHFMIA
DDILKRGDCEYAKAFVMSSNELICSVNDLKKKFKDFKPSNENSDLYSFDHIFPGTETNNF
VNVLYGEVGSKEFNEFHNLLKTEIANGKNIKYVARHFIRHRSQTKVRLSGYGVELHLKST
EYKAQDDSPRKDNEKLFESDSEDTQVEGFNFKKLKEIYPHLSHSLDKMRASLLEKNEEIS
PLKAWEFQELGLQAAARVASIQGEEALSILQFTAQNFPSQAKSLIHTKVSDDFKAEMKNN
IEVLARNLNLQPPDAALFINGLYFDAETLDVETLLDTIKKESMILDGLNQIGLKGSASAP
LLALDFASQAKEFAIDIRDSSIIWINDLEVDKEYKRWGSSVMDMLRPTFPGMMRSVRKNF
FNLLLVFDPIKPEARDIIRMSESFIVNMAPIRLGLVFETTRSVNNEGETNIVYRTINCAF
NYMHQKKGTREALSFLLDIFASVEKDKDVDLETIRKVFKKTNTKLSSAEIEDVLGQDSDF
DYGRQLSEEFIERLGVKVIPQALLNGVLLNQKSLNRDEYEELILTEIMQQTPTLQKAIYR
GELSDGENVIDYLMQQPHVMLRLNQRILSNDNPQNLDMHNGKAYPDIEDVKILATLNNED
LTATLLKNIHYFEPKSSGEKFMKSRLHFVTIKVVTDLNTKRGKNLLRNALEYLKGSSGTR
LTFIPNADKSEATSKDEYNLNAIVWSILNTYEGKEATERTLRILNGKEEISDSVKGFLKA
TELHLKMLRVYCQRVLKMKSSETSVIVNGRIFGPFEDEETFTVDDFNLIEKINQQQYINK
IKLAFKSIKVEDFDLELSSDLMLRLLSLLIPRHSSKNRFNIPAELREDFTVVKLLPKVKN
EPSFNLVAVVDPASRGAQKLSPLLNLLRQVVNCDLKLFLCAVDKHSDMPVKNFYRYVIEP
ELQFTTEGKLTNGPAAKFVGLPAKHLLTQNLAVPENWMVDLIRSVYDLDNIRLSDIGGPV
HSEYELEYLLLEGHCFDTTSGSPPRGLQFILGTKEQEAVVDTIVMANLGYFQLKANPGAW
TLKLRHGKSSEIYDITNVDGLNTIHSVEDGFVSVVVNSFRSHVLKVRVTKKPEMLNVDLL
GDNDEPSSGIWNSITSTFSGSNAESNIETINIFSVASGHLYERLLRIMMLSLLKHTKSPV
KFWFLKNYLSPQFKDFLPAMSREYNFDYELVQYKWPRWLHQQTEKQRTIWGYKILFLDVL
FPLNVKKIIFVDADQIVRADMKELYEMDLNGAPYGYVPFCDSRKEMDGFRFWNSGYWRNH
LQGRKYHISALYVVDLKRFRKIAAGDRLRGQYQALSQDPNSLSNLDQDLPNNMVHQVQIK
SLPQEWLWCETWCSDDGLKHAKTIDLCNNPLTKEAKLTAAQRIVPEWKDYDNEIKNLMAR
IDDDEHQEHVTIHKQYDEKTPNEKHIEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g4147.t1 | CDD | cd06432 | GT8_HUGT1_C_like | 1230 | 1477 | 0.0 |
| 10 | g4147.t1 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1233 | 1483 | 3.2E-20 |
| 18 | g4147.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 261 | - |
| 7 | g4147.t1 | PANTHER | PTHR11226 | UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE | 16 | 1509 | 0.0 |
| 4 | g4147.t1 | Pfam | PF18400 | Thioredoxin-like domain | 41 | 225 | 2.3E-44 |
| 2 | g4147.t1 | Pfam | PF18401 | Thioredoxin-like domain | 295 | 427 | 5.5E-30 |
| 6 | g4147.t1 | Pfam | PF18402 | Thioredoxin-like domain | 435 | 687 | 4.2E-61 |
| 5 | g4147.t1 | Pfam | PF18403 | Thioredoxin-like domain | 716 | 929 | 6.2E-39 |
| 3 | g4147.t1 | Pfam | PF06427 | UDP-glucose:Glycoprotein Glucosyltransferase | 1092 | 1200 | 5.6E-38 |
| 1 | g4147.t1 | Pfam | PF18404 | Glucosyltransferase 24 | 1230 | 1497 | 1.2E-148 |
| 12 | g4147.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 24 | - |
| 13 | g4147.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 7 | - |
| 14 | g4147.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 8 | 19 | - |
| 15 | g4147.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 20 | 24 | - |
| 11 | g4147.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 25 | 1528 | - |
| 8 | g4147.t1 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 1230 | 1494 | 2.17E-49 |
| 9 | g4147.t1 | SignalP_EUK | SignalP-TM | SignalP-TM | 1 | 24 | - |
| 17 | g4147.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 24 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
| GO:0003980 | UDP-glucose:glycoprotein glucosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K11718 (UDP-glucose:glycoprotein glucosyltransferase [EC:2.4.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
