General information for g4147.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucose:glycoprotein glucosyltransferase.
Parent gene
- The parent gene g4147 is located on chr_3: 30952708..30954007 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4147 | g4147.t4 | TTS | g4147.t4 | 30948674 | 30948674 |
| chr_3 | g4147 | g4147.t4 | isoform | g4147.t4 | 30948882 | 30950194 |
| chr_3 | g4147 | g4147.t4 | exon | g4147.t4.exon1 | 30948882 | 30948916 |
| chr_3 | g4147 | g4147.t4 | exon | g4147.t4.exon2 | 30949000 | 30949211 |
| chr_3 | g4147 | g4147.t4 | cds | g4147.t4.CDS1 | 30949177 | 30949211 |
| chr_3 | g4147 | g4147.t4 | exon | g4147.t4.exon3 | 30949357 | 30949398 |
| chr_3 | g4147 | g4147.t4 | cds | g4147.t4.CDS2 | 30949357 | 30949398 |
| chr_3 | g4147 | g4147.t4 | exon | g4147.t4.exon4 | 30949464 | 30949802 |
| chr_3 | g4147 | g4147.t4 | cds | g4147.t4.CDS3 | 30949464 | 30949802 |
| chr_3 | g4147 | g4147.t4 | exon | g4147.t4.exon5 | 30949892 | 30950194 |
| chr_3 | g4147 | g4147.t4 | cds | g4147.t4.CDS4 | 30949892 | 30950102 |
| chr_3 | g4147 | g4147.t4 | TSS | g4147.t4 | NA | NA |
Sequences
>g4147.t4 Gene=g4147 Length=931
CATTCAGTGGTTCAAATGCAGAGTCAAATATTGAAACTATCAACATTTTCTCGGTCGCAT
CTGGCCATCTTTATGAACGTCTTTTGCGCATTATGATGCTGTCGTTGTTGAAGCATACAA
AATCTCCTGTGAAATTTTGGTTCTTGAAAAACTATTTATCGCCACAATTCAAAGATTTCC
TACCAGCAATGAGCCGTGAATATAATTTTGACTATGAACTAGTGCAATATAAATGGCCCA
GATGGCTTCATCAACAAACTGAAAAACAAAGAACAATCTGGGGATATAAAATTCTGTTTT
TAGATGTTCTATTTCCTCTGAATGTAAAGAAGATTATTTTTGTTGATGCGGATCAAATTG
TGAGAGCAGACATGAAGGAACTTTATGAAATGGATTTGAATGGTGCACCATATGGCTACG
TACCATTTTGTGACTCGCGAAAAGAAATGGATGGTTTCCGATTTTGGAATTCAGGTTATT
GGAGGAATCATTTACAAGGTCGCAAATACCATATTTCTGCACTATATGTTGTGGATTTGA
AAAGATTTAGAAAAATTGCTGCCGGTGATAGATTAAGAGGACAATATCAAGCTTTAAGTC
AAGATCCTAATTCTCTTAGTAACCTTGATCAAGATTTGCCTAATAATATGGTTCATCAAG
TTCAGATTAAATCTCTTCCACAAGTGTTTATTATTACAGGTGTAGCGATGATGGATTGAA
ACATGCCAAAACAATTGATTTATGTAATAATCCTTTGACAAAAGAAGCTAAATTAACGGC
AGCTCAAAGAATTGTACCAGAATGGAAAGATTATGATAATGAAATAAAAAACCTAATGGC
ACGAATTGATGATGACGAACATCAAGAGCATGTTACAATTCACAAACAATATGATGAGAA
AACACCAAATGAGAAGCACATCGAGCTGTGA
>g4147.t4 Gene=g4147 Length=208
MMLSLLKHTKSPVKFWFLKNYLSPQFKDFLPAMSREYNFDYELVQYKWPRWLHQQTEKQR
TIWGYKILFLDVLFPLNVKKIIFVDADQIVRADMKELYEMDLNGAPYGYVPFCDSRKEMD
GFRFWNSGYWRNHLQGRKYHISALYVVDLKRFRKIAAGDRLRGQYQALSQDPNSLSNLDQ
DLPNNMVHQVQIKSLPQVFIITGVAMMD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g4147.t4 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 1 | 205 | 0 |
| 2 | g4147.t4 | PANTHER | PTHR11226 | UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE | 1 | 197 | 0 |
| 1 | g4147.t4 | Pfam | PF18404 | Glucosyltransferase 24 | 1 | 200 | 0 |
| 3 | g4147.t4 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 1 | 203 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
| GO:0003980 | UDP-glucose:glycoprotein glucosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
