General information for g4147.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucose:glycoprotein glucosyltransferase.
Parent gene
- The parent gene g4147 is located on chr_3: 30952708..30954007 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4147 | g4147.t5 | isoform | g4147.t5 | 30951137 | 30952353 |
| chr_3 | g4147 | g4147.t5 | exon | g4147.t5.exon1 | 30951137 | 30951798 |
| chr_3 | g4147 | g4147.t5 | cds | g4147.t5.CDS1 | 30951138 | 30951798 |
| chr_3 | g4147 | g4147.t5 | exon | g4147.t5.exon2 | 30951872 | 30952353 |
| chr_3 | g4147 | g4147.t5 | cds | g4147.t5.CDS2 | 30951872 | 30952290 |
| chr_3 | g4147 | g4147.t5 | TSS | g4147.t5 | NA | NA |
| chr_3 | g4147 | g4147.t5 | TTS | g4147.t5 | NA | NA |
Sequences
>g4147.t5 Gene=g4147 Length=1144
TCAGTGAATAACGAAGGAGAAACGAATATTGTTTATCGTACCATTAATTGTGCCTTCAAT
TACATGCATCAAAAGAAAGGAACACGTGAAGCATTGAGTTTTCTCTTAGATATTTTTGCG
TCGGTAGAAAAGGATAAAGATGTTGATTTAGAGACTATTCGTAAAGTTTTTAAAAAAACA
AATACAAAGCTAAGCAGTGCAGAAATTGAAGATGTTTTAGGTCAAGATTCAGATTTTGAT
TATGGACGACAATTGTCTGAAGAATTTATTGAACGATTGGGCGTAAAAGTAATTCCTCAG
GCGTTGCTTAATGGTGTCCTCTTAAATCAAAAATCACTTAATCGCGATGAATATGAAGAG
CTTATTTTAACAGAAATCATGCAACAGACACCCACACTTCAGAAGGCTATTTATCGTGGA
GAATTAAGTGATGGTGAAAATGTTATTGATTATTTAATGCAACAACCACATGTGATGCTT
AGATTAAATCAAAGAATTTTATCGAACGATAATCCACAAAACTTGGATATGCATAATGGC
AAAGCATATCCTGATATTGAAGACGTTAAAATTCTTGCAACATTAAATAATGAGGACTTA
ACGGCAACATTATTGAAAAATATACATTATTTTGAACCGAAGAGTTCGGGTGAAAAATTT
ATGAAGAGCAGACTGCATTTTGTCACGATTAAAGTCGTTACTGATTTAAACACGAAACGT
GGTAAAAATCTTCTCAGAAATGCTCTCGAATATTTAAAGGGAAGCAGTGGAACGCGATTA
ACTTTCATACCAAATGCTGATAAGTCAGAAGCTACTTCGAAAGATGAATATAATTTAAAT
GCGATTGTCTGGAGCATTTTAAATACATATGAGGGAAAAGAAGCGACAGAACGTACACTT
CGTATACTCAATGGAAAAGAAGAAATTTCTGACAGTGTTAAAGGATTCCTTAAAGCAACT
GAATTGCATCTCAAAATGCTTCGAGTTTATTGTCAACGAGTTCTTAAAATGAAAAGTAGT
GAAACTAGTGTCATTGTTAATGGAAGAATATTTGGACCATTTGAGGATGAGGAAACATTT
ACAGTTGATGATTTCAATTTGATTGAGAAAATCAATCAACAACAGTACATAAATAAAATA
AAAC
>g4147.t5 Gene=g4147 Length=360
MHQKKGTREALSFLLDIFASVEKDKDVDLETIRKVFKKTNTKLSSAEIEDVLGQDSDFDY
GRQLSEEFIERLGVKVIPQALLNGVLLNQKSLNRDEYEELILTEIMQQTPTLQKAIYRGE
LSDGENVIDYLMQQPHVMLRLNQRILSNDNPQNLDMHNGKAYPDIEDVKILATLNNEDLT
ATLLKNIHYFEPKSSGEKFMKSRLHFVTIKVVTDLNTKRGKNLLRNALEYLKGSSGTRLT
FIPNADKSEATSKDEYNLNAIVWSILNTYEGKEATERTLRILNGKEEISDSVKGFLKATE
LHLKMLRVYCQRVLKMKSSETSVIVNGRIFGPFEDEETFTVDDFNLIEKINQQQYINKIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g4147.t5 | PANTHER | PTHR11226 | UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE | 3 | 360 | 0 |
| 2 | g4147.t5 | Pfam | PF18402 | Thioredoxin-like domain | 2 | 145 | 0 |
| 1 | g4147.t5 | Pfam | PF18403 | Thioredoxin-like domain | 174 | 360 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
| GO:0003980 | UDP-glucose:glycoprotein glucosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
