General information for g4147.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucose:glycoprotein glucosyltransferase.
Parent gene
- The parent gene g4147 is located on chr_3: 30952708..30954007 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4147 | g4147.t7 | isoform | g4147.t7 | 30952708 | 30954007 |
| chr_3 | g4147 | g4147.t7 | exon | g4147.t7.exon1 | 30952708 | 30953911 |
| chr_3 | g4147 | g4147.t7 | cds | g4147.t7.CDS1 | 30952708 | 30953911 |
| chr_3 | g4147 | g4147.t7 | exon | g4147.t7.exon2 | 30954003 | 30954007 |
| chr_3 | g4147 | g4147.t7 | cds | g4147.t7.CDS2 | 30954003 | 30954007 |
| chr_3 | g4147 | g4147.t7 | TSS | g4147.t7 | 30954136 | 30954136 |
| chr_3 | g4147 | g4147.t7 | TTS | g4147.t7 | NA | NA |
Sequences
>g4147.t7 Gene=g4147 Length=1209
ATGAGAATGGGTGTAATTAAATCAATTTTTAGTATAGTGATTTTCATTATTAGTATAAGT
TTATCATATGCAGCAAAAAGCCATCCGATCTCAACTCTAATCAATGCGAAATTTTCATTG
ACACCAGTACAGCTGGAAATATCAGAATATTTGTCAGACAGTTCAAATCAAAAATTCTGG
ATTTTTATAGATGAGCTGACTAAAGTCAATCTTGATGGTTTACAGACAGACCAACAACGT
TATAAAACTGCGATCGATATTGCAGGAAAACATTTAAGTCATGCTCAAATCAAGTTATTG
AAGTTATCATTATCTTTAAGATCACTCACGCCACGCATACAATCACACTTTATGATTGCT
GATGACATTTTAAAGCGTGGTGATTGTGAATATGCTAAAGCATTTGTTATGAGTAGTAAT
GAGTTAATTTGTTCAGTGAATGATTTAAAGAAAAAATTTAAGGATTTCAAACCATCAAAT
GAAAATTCAGACCTGTATAGCTTTGATCACATTTTTCCTGGTACAGAAACTAACAATTTT
GTTAATGTGCTTTATGGAGAAGTCGGCAGTAAGGAATTTAACGAATTTCATAATCTTCTT
AAGACTGAAATTGCAAATGGCAAAAACATTAAATATGTAGCAAGGCATTTTATTCGTCAT
CGTTCTCAAACAAAAGTTCGTCTCAGCGGATATGGTGTCGAATTGCATTTGAAATCAACT
GAATACAAAGCACAAGATGATTCACCAAGGAAAGATAATGAGAAGCTCTTTGAATCGGAT
TCAGAAGATACACAAGTTGAAGGATTTAATTTTAAAAAATTAAAAGAGATTTACCCACAT
TTGTCACATTCTTTAGACAAGATGAGAGCCAGTTTGCTTGAAAAGAATGAAGAGATTTCT
CCTTTAAAAGCTTGGGAATTTCAAGAACTTGGTTTGCAAGCAGCAGCACGTGTAGCTTCC
ATTCAGGGTGAGGAGGCTCTCTCAATTCTTCAATTCACAGCTCAAAATTTTCCTAGTCAA
GCCAAATCTCTCATTCATACTAAAGTAAGTGATGATTTTAAGGCAGAAATGAAAAACAAT
ATTGAAGTTCTTGCAAGAAATTTGAACCTTCAACCACCTGATGCCGCACTCTTTATCAAT
GGTCTTTATTTTGATGCCGAAACTCTTGATGTTGAAACCCTTCTTGATACAATCAAAAAA
GAATCAATG
>g4147.t7 Gene=g4147 Length=403
MRMGVIKSIFSIVIFIISISLSYAAKSHPISTLINAKFSLTPVQLEISEYLSDSSNQKFW
IFIDELTKVNLDGLQTDQQRYKTAIDIAGKHLSHAQIKLLKLSLSLRSLTPRIQSHFMIA
DDILKRGDCEYAKAFVMSSNELICSVNDLKKKFKDFKPSNENSDLYSFDHIFPGTETNNF
VNVLYGEVGSKEFNEFHNLLKTEIANGKNIKYVARHFIRHRSQTKVRLSGYGVELHLKST
EYKAQDDSPRKDNEKLFESDSEDTQVEGFNFKKLKEIYPHLSHSLDKMRASLLEKNEEIS
PLKAWEFQELGLQAAARVASIQGEEALSILQFTAQNFPSQAKSLIHTKVSDDFKAEMKNN
IEVLARNLNLQPPDAALFINGLYFDAETLDVETLLDTIKKESM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4147.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 261 | - |
| 3 | g4147.t7 | PANTHER | PTHR11226 | UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE | 16 | 402 | 1.6E-93 |
| 2 | g4147.t7 | Pfam | PF18400 | Thioredoxin-like domain | 41 | 225 | 2.1E-45 |
| 1 | g4147.t7 | Pfam | PF18401 | Thioredoxin-like domain | 295 | 402 | 9.4E-26 |
| 8 | g4147.t7 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 24 | - |
| 9 | g4147.t7 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 7 | - |
| 10 | g4147.t7 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 8 | 19 | - |
| 11 | g4147.t7 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 20 | 24 | - |
| 7 | g4147.t7 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 25 | 403 | - |
| 6 | g4147.t7 | SignalP_EUK | SignalP-TM | SignalP-TM | 1 | 24 | - |
| 4 | g4147.t7 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 5 | 24 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
| GO:0003980 | UDP-glucose:glycoprotein glucosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed