General information for g4147.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucose:glycoprotein glucosyltransferase.
Parent gene
- The parent gene g4147 is located on chr_3: 30952708..30954007 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4147 | g4147.t8 | isoform | g4147.t8 | 30952708 | 30954007 |
| chr_3 | g4147 | g4147.t8 | exon | g4147.t8.exon1 | 30952708 | 30953937 |
| chr_3 | g4147 | g4147.t8 | cds | g4147.t8.CDS1 | 30952708 | 30953910 |
| chr_3 | g4147 | g4147.t8 | exon | g4147.t8.exon2 | 30954003 | 30954007 |
| chr_3 | g4147 | g4147.t8 | TSS | g4147.t8 | 30954136 | 30954136 |
| chr_3 | g4147 | g4147.t8 | TTS | g4147.t8 | NA | NA |
Sequences
>g4147.t8 Gene=g4147 Length=1235
ATGAGTGCATTGATGATTTTTCATTTTTCAGAATGGGTGTAATTAAATCAATTTTTAGTA
TAGTGATTTTCATTATTAGTATAAGTTTATCATATGCAGCAAAAAGCCATCCGATCTCAA
CTCTAATCAATGCGAAATTTTCATTGACACCAGTACAGCTGGAAATATCAGAATATTTGT
CAGACAGTTCAAATCAAAAATTCTGGATTTTTATAGATGAGCTGACTAAAGTCAATCTTG
ATGGTTTACAGACAGACCAACAACGTTATAAAACTGCGATCGATATTGCAGGAAAACATT
TAAGTCATGCTCAAATCAAGTTATTGAAGTTATCATTATCTTTAAGATCACTCACGCCAC
GCATACAATCACACTTTATGATTGCTGATGACATTTTAAAGCGTGGTGATTGTGAATATG
CTAAAGCATTTGTTATGAGTAGTAATGAGTTAATTTGTTCAGTGAATGATTTAAAGAAAA
AATTTAAGGATTTCAAACCATCAAATGAAAATTCAGACCTGTATAGCTTTGATCACATTT
TTCCTGGTACAGAAACTAACAATTTTGTTAATGTGCTTTATGGAGAAGTCGGCAGTAAGG
AATTTAACGAATTTCATAATCTTCTTAAGACTGAAATTGCAAATGGCAAAAACATTAAAT
ATGTAGCAAGGCATTTTATTCGTCATCGTTCTCAAACAAAAGTTCGTCTCAGCGGATATG
GTGTCGAATTGCATTTGAAATCAACTGAATACAAAGCACAAGATGATTCACCAAGGAAAG
ATAATGAGAAGCTCTTTGAATCGGATTCAGAAGATACACAAGTTGAAGGATTTAATTTTA
AAAAATTAAAAGAGATTTACCCACATTTGTCACATTCTTTAGACAAGATGAGAGCCAGTT
TGCTTGAAAAGAATGAAGAGATTTCTCCTTTAAAAGCTTGGGAATTTCAAGAACTTGGTT
TGCAAGCAGCAGCACGTGTAGCTTCCATTCAGGGTGAGGAGGCTCTCTCAATTCTTCAAT
TCACAGCTCAAAATTTTCCTAGTCAAGCCAAATCTCTCATTCATACTAAAGTAAGTGATG
ATTTTAAGGCAGAAATGAAAAACAATATTGAAGTTCTTGCAAGAAATTTGAACCTTCAAC
CACCTGATGCCGCACTCTTTATCAATGGTCTTTATTTTGATGCCGAAACTCTTGATGTTG
AAACCCTTCTTGATACAATCAAAAAAGAATCAATG
>g4147.t8 Gene=g4147 Length=401
MGVIKSIFSIVIFIISISLSYAAKSHPISTLINAKFSLTPVQLEISEYLSDSSNQKFWIF
IDELTKVNLDGLQTDQQRYKTAIDIAGKHLSHAQIKLLKLSLSLRSLTPRIQSHFMIADD
ILKRGDCEYAKAFVMSSNELICSVNDLKKKFKDFKPSNENSDLYSFDHIFPGTETNNFVN
VLYGEVGSKEFNEFHNLLKTEIANGKNIKYVARHFIRHRSQTKVRLSGYGVELHLKSTEY
KAQDDSPRKDNEKLFESDSEDTQVEGFNFKKLKEIYPHLSHSLDKMRASLLEKNEEISPL
KAWEFQELGLQAAARVASIQGEEALSILQFTAQNFPSQAKSLIHTKVSDDFKAEMKNNIE
VLARNLNLQPPDAALFINGLYFDAETLDVETLLDTIKKESM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4147.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 259 | - |
| 3 | g4147.t8 | PANTHER | PTHR11226 | UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE | 14 | 400 | 1.9E-93 |
| 2 | g4147.t8 | Pfam | PF18400 | Thioredoxin-like domain | 39 | 223 | 2.1E-45 |
| 1 | g4147.t8 | Pfam | PF18401 | Thioredoxin-like domain | 293 | 400 | 9.3E-26 |
| 8 | g4147.t8 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 9 | g4147.t8 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 10 | g4147.t8 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 17 | - |
| 11 | g4147.t8 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 22 | - |
| 7 | g4147.t8 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 401 | - |
| 6 | g4147.t8 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 22 | - |
| 4 | g4147.t8 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006486 | protein glycosylation | BP |
| GO:0003980 | UDP-glucose:glycoprotein glucosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
