General information for g4155.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4155 is located on chr_3: 31026579..31027215 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4155 | g4155.t23 | isoform | g4155.t23 | 31026098 | 31027215 |
| chr_3 | g4155 | g4155.t23 | exon | g4155.t23.exon1 | 31026098 | 31026506 |
| chr_3 | g4155 | g4155.t23 | cds | g4155.t23.CDS1 | 31026492 | 31026506 |
| chr_3 | g4155 | g4155.t23 | exon | g4155.t23.exon2 | 31026572 | 31026627 |
| chr_3 | g4155 | g4155.t23 | cds | g4155.t23.CDS2 | 31026572 | 31026627 |
| chr_3 | g4155 | g4155.t23 | exon | g4155.t23.exon3 | 31026788 | 31027215 |
| chr_3 | g4155 | g4155.t23 | cds | g4155.t23.CDS3 | 31026788 | 31026797 |
| chr_3 | g4155 | g4155.t23 | TTS | g4155.t23 | 31027208 | 31027208 |
| chr_3 | g4155 | g4155.t23 | TSS | g4155.t23 | NA | NA |
Sequences
>g4155.t23 Gene=g4155 Length=893
AGGTTGTTGTGGAGCTATTCGTGAATCGCAATGTCTTCTCAACCTCTATTCATTGTGTCT
ACTTTGCCTTGTCGTTTTGCAAGTAGTGCTTGCAATTTTTGTCTTTGTCTATAATGAAGA
TGTTCAAAGAGGCGCCCTTAAGGGATGGGATAAAATCTGGAGTGGTCGCCAACAAGGACC
TCTTAATGATCAAGCGATTAATCAAATTCAACGAGCTTTGCAATGCTGTGGAAGTACGAC
TTTTTTGGACTATGGTGTGACTTTACCTAGTAGCTGTTGTGATCCAGAAGCATCTTCTTG
TAATCAACTAGTTGCATATAAAACAGGATGTCGACCACAAATCAAATATGTCGTTCAAAA
TTCAGCTCAATGGATTGCCTATTTATCGATCATTATGGCCCTTGTTGAGCTGGTTGGAGT
AATTTTTGGTTGCTGTCTTAGCTCAAACATTCGAAATTCATCTAGATATGAGTAAAGAAT
CAACAATTATTCTCACACCATCAACATTTTGGGCGATAACTATTAAATATTTAATTAACA
AACATTTTTCTCATATACACACATAAAAACACTCCTTTATATTTTTTTCATTAGTATTGA
AATATATGAGAACCTTAACAAAAAAAATACATTAAAAAATCAACCTATATGCATATATCA
TCAGCCATAATTGCTTACTTTTATATTATTCATGCACGCTTAAATCATATCGTTTATGTA
ATCAATTAGAGATATTCGTCAAATTTAGCGTATTTGTGTATCTCTAAATATACACATGTA
TTTTTTTAACGAAATAAGAGTTTCTCATCATATACGCTTAAGTCATTTGATGTCAGTTTC
CAAAAAATACGTTTTAGTTGAAATGTAAAAAAATAAAATATTTTTGTCAAAAA
>g4155.t23 Gene=g4155 Length=26
MALVELVGVIFGCCLSSNIRNSSRYE
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
