Gene loci information

Transcript annotation

  • This transcript has been annotated as Fatty acid synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4201 g4201.t1 isoform g4201.t1 54520 56458
chr_2 g4201 g4201.t1 exon g4201.t1.exon1 54520 54783
chr_2 g4201 g4201.t1 cds g4201.t1.CDS1 54520 54783
chr_2 g4201 g4201.t1 exon g4201.t1.exon2 54897 55175
chr_2 g4201 g4201.t1 cds g4201.t1.CDS2 54897 55175
chr_2 g4201 g4201.t1 exon g4201.t1.exon3 55239 55588
chr_2 g4201 g4201.t1 cds g4201.t1.CDS3 55239 55588
chr_2 g4201 g4201.t1 exon g4201.t1.exon4 55642 56458
chr_2 g4201 g4201.t1 cds g4201.t1.CDS4 55642 56458
chr_2 g4201 g4201.t1 TSS g4201.t1 NA NA
chr_2 g4201 g4201.t1 TTS g4201.t1 NA NA

Sequences

>g4201.t1 Gene=g4201 Length=1710
ATGAAAGAATGCTCAATAGGATTTGAATTTTCTGGAATCAGTGATAAAACTGGAGAACGT
ATTATGGGAACAGCCGTCAACTGTCAAGGATTAGCATCATATGTGAATGTCAAAGATGCA
TTAATAATAAATTTGCCAGAAAATATTTATTTAGAAGAAGCAGCAACTATTCCTATTGCT
TACATTACTGTTTATTATTCATTCTTTGGAAAAACTACAATCGAGAAAGATAAATCTATT
TTGATTCATTCTGGTGCTGGCGCTTTGAAAATTGAAAACATCGGAAATTCTCGTGATATT
TCATTCTTTAAACTAATTATGGAAAGAACTAATAGAAAAGGAGTTGATTATGTGCTAAAT
TCACTTACTGGTGAAAAAATGATTGCTTCACTCAATTGTTTGGGTCAAAATGGAATATTC
TTAGAAATCGGACGAGTTGATTTGATACAAAAAACTAAAATTGATTTTAATTTTATAGAA
AAGAATATTTCTATAAAGTTGATTATGGTCGATCAAATTAATTGGTCTTGTGACGAAGGC
AAGAAAGCTATTCAAATGTTAAAGGATGGATTAAGAAATCAAGTTATAAAACCATTGAAA
CTAACGGTTTTTGATGCAAATGAAATTAGGAAAGCTTTTCACTATATGTCAACTGGTAAT
CACATTGGAAAAGTTTTGATAAAAATCCGTGAAAATGAAAACGATTTGTCAACACTTTCA
ATTAATGTTAGTCCTAGATTTTATTGCAATTGTAAGCATTCATACATCATTGTTGGTGGT
TTGGGTGGATTAGGACTTGAATTTTCACAATGGTTAATTAAACGAAAATGTAGAAAATTA
ATCTTAAGCTCAAGTCGTGGAATTAGTAATCAATATCAAGCATTTAAAATCAAATATTGG
AAATCATTTGGAATTGAAGTTTTTGTGAGCACATCAAATATTTTAACTGAAGCTGGTTGT
GAGGAACTTATCAAAACAGCAATAACTTTAGGTCCAGTTGGCGGAATTTTCAATTTTGCT
GCTGTCATTCGAGATGCTGAATTTGAAAATCACACAATTGAAGATTTCAAACAATCTTTG
GCACCAAAGTTTTTAGCTACAAAATTCTTGCATGAATTATCTCTTAAATATTGCCCAAAG
TTGAAATATTTTGTTGGTTATTCAAGCATTATTTGTGGTCGCGGCTATCCAGGACAAACA
ACTTATGGAATGGCAAATTCAATCATGGAAAGAATCATCGAAAAACGTCATGAGATGAGA
TTGCCAGCAAAAGTAATTCAATGGGGTCCAATCGGTGATGTTGGCTTGCTCGCTGATATG
GAATTTAATAGAAGACTAAAATTGAGCTATCAGTTTCCATTGCAATCACTTGCATCATTT
TTAGAACAACATGATTTTCTTCTTAATCATCCTGAACCAATAGTTGCTTGTACAGTAACG
ATCGATAAGAGCTTGATAACTGATAAAAAGAAAAATTTCATTGAAATGTTGATGGAAGCT
TTAAATATTGAAGATCGCAAATCAATTTCAATGAGTTCTACATTTTCACAACTTGGCATT
GATTCACTAGCTGGAATTGAAATGCAACAATTGATTGAGAAGGAATATGGTGTTTTAGTT
TCATTAAATGAATTACGTTCATTGACATTGGCAAAATTAGAAGAAAGGATAAATTCAAAT
AGAAAGAAAACGACGAAAAATAACTTTTAA

>g4201.t1 Gene=g4201 Length=569
MKECSIGFEFSGISDKTGERIMGTAVNCQGLASYVNVKDALIINLPENIYLEEAATIPIA
YITVYYSFFGKTTIEKDKSILIHSGAGALKIENIGNSRDISFFKLIMERTNRKGVDYVLN
SLTGEKMIASLNCLGQNGIFLEIGRVDLIQKTKIDFNFIEKNISIKLIMVDQINWSCDEG
KKAIQMLKDGLRNQVIKPLKLTVFDANEIRKAFHYMSTGNHIGKVLIKIRENENDLSTLS
INVSPRFYCNCKHSYIIVGGLGGLGLEFSQWLIKRKCRKLILSSSRGISNQYQAFKIKYW
KSFGIEVFVSTSNILTEAGCEELIKTAITLGPVGGIFNFAAVIRDAEFENHTIEDFKQSL
APKFLATKFLHELSLKYCPKLKYFVGYSSIICGRGYPGQTTYGMANSIMERIIEKRHEMR
LPAKVIQWGPIGDVGLLADMEFNRRLKLSYQFPLQSLASFLEQHDFLLNHPEPIVACTVT
IDKSLITDKKKNFIEMLMEALNIEDRKSISMSSTFSQLGIDSLAGIEMQQLIEKEYGVLV
SLNELRSLTLAKLEERINSNRKKTTKNNF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g4201.t1 CDD cd05195 enoyl_red 3 227 1.82444E-61
18 g4201.t1 CDD cd08954 KR_1_FAS_SDR_x 231 475 1.16872E-55
13 g4201.t1 Gene3D G3DSA:3.90.180.10 - 1 89 1.5E-20
14 g4201.t1 Gene3D G3DSA:3.90.180.10 - 90 243 8.1E-37
11 g4201.t1 Gene3D G3DSA:3.40.50.720 - 244 488 5.3E-34
12 g4201.t1 Gene3D G3DSA:1.10.1200.10 - 489 568 2.3E-14
4 g4201.t1 PANTHER PTHR43775 FATTY ACID SYNTHASE 2 88 2.2E-179
6 g4201.t1 PANTHER PTHR43775:SF23 FATTY ACID SYNTHASE 3 2 88 2.2E-179
5 g4201.t1 PANTHER PTHR43775 FATTY ACID SYNTHASE 91 567 2.2E-179
7 g4201.t1 PANTHER PTHR43775:SF23 FATTY ACID SYNTHASE 3 91 567 2.2E-179
2 g4201.t1 Pfam PF13602 Zinc-binding dehydrogenase 108 227 2.0E-10
3 g4201.t1 Pfam PF08659 KR domain 254 432 4.9E-37
1 g4201.t1 Pfam PF00550 Phosphopantetheine attachment site 495 556 2.5E-7
16 g4201.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 253 -
17 g4201.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 254 273 -
15 g4201.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 274 569 -
22 g4201.t1 ProSiteProfiles PS50075 Carrier protein (CP) domain profile. 484 564 13.203
20 g4201.t1 SMART SM00829 PKS_ER_names_mod 1 227 1.5E-21
21 g4201.t1 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 253 434 1.7E-12
8 g4201.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 49 170 1.54E-17
9 g4201.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 254 485 2.66E-27
10 g4201.t1 SUPERFAMILY SSF47336 ACP-like 493 559 1.31E-9

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed