Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4207 g4207.t1 isoform g4207.t1 199885 200932
chr_2 g4207 g4207.t1 exon g4207.t1.exon1 199885 200576
chr_2 g4207 g4207.t1 cds g4207.t1.CDS1 199885 200576
chr_2 g4207 g4207.t1 exon g4207.t1.exon2 200689 200932
chr_2 g4207 g4207.t1 cds g4207.t1.CDS2 200689 200932
chr_2 g4207 g4207.t1 TSS g4207.t1 NA NA
chr_2 g4207 g4207.t1 TTS g4207.t1 NA NA

Sequences

>g4207.t1 Gene=g4207 Length=936
ATGAAGAATAGACCTAAGAATTCAGGCCATCGCAATAATTCAACAATTCCAGTTAAGAAT
CAACAAGTTGGTTCTAACCTCAAATATGCGTCAAATGTTTCGATGGATTTTGGAAGTGAT
TCAATCAAAGAAGATGATAAGTCATCAAAAATTAAACCGATCATTGTGGATAGTGGAATA
GCAGCTATCAGAAATTTCATTCAAAATTTGAAACTCATGAAAAAACCAATGCTCAGGATT
TCCTATTCAATATTCGTAAGATGGGAAGTTCTTGATTGTAGCAAGAAAAAATTGACACAG
TGCTATAATTGTCAACAATGGGGTCACTCCTCAAACAATTGTGGCTATAAATCAAGATGT
GTGAAATGCCGAGAATCACATGCTCCTTGTGAATGCAAAAGGAAGTCAAGAGAAGGTGAT
CCAATTTGCGTAAATTGCGGTGGTAAACATGCTGCAAATTTTCGTGGTTGCTCAGAATTC
ATGAAATATCAACAAAAAATTCAATCATTTCGCCAAAAAGCGAAAGCTAATAATCACAAT
CCATGGAACTCAACTTTCCAAAATAAATCAAGGAGCACTCAATTCAATTTGTATTCTGAG
AATTTTCCTAGTCTGAGTGAGAATTTCAGACACAGTACAAATAATCAGACATTTGATCAA
CATGTAACATCTCCAATTATCAGTTCAACTCAAGATGTAAAAAAAGCCAATTCATTAATA
CAAAAATTCAATGAAACTTGTAAGAAATTGAATGAAATTCCTGATATAGAACAAACAATA
AACAACTTTATTGACATGGTAAATGAACTTGCTGAAGCCAAAACCGAAACGGATAGGCAA
ATGATCCTGGTTAGACATTTCAATATTCATAAGATAGATCTATCAAATGAAGTAATTCAA
CGAATTATCAACGCATGCAAAAAATTTCCAACTTAG

>g4207.t1 Gene=g4207 Length=311
MKNRPKNSGHRNNSTIPVKNQQVGSNLKYASNVSMDFGSDSIKEDDKSSKIKPIIVDSGI
AAIRNFIQNLKLMKKPMLRISYSIFVRWEVLDCSKKKLTQCYNCQQWGHSSNNCGYKSRC
VKCRESHAPCECKRKSREGDPICVNCGGKHAANFRGCSEFMKYQQKIQSFRQKAKANNHN
PWNSTFQNKSRSTQFNLYSENFPSLSENFRHSTNNQTFDQHVTSPIISSTQDVKKANSLI
QKFNETCKKLNEIPDIEQTINNFIDMVNELAEAKTETDRQMILVRHFNIHKIDLSNEVIQ
RIINACKKFPT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g4207.t1 Coils Coil Coil 233 253 -
2 g4207.t1 Coils Coil Coil 256 276 -
1 g4207.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 21 -
4 g4207.t1 ProSiteProfiles PS50158 Zinc finger CCHC-type profile. 101 114 8.746

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008270 zinc ion binding MF
GO:0003676 nucleic acid binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed