General information for g4211.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine–pyruvate aminotransferase.
Parent gene
- The parent gene g4211 is located on chr_2: 219582..225289 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4211 | g4211.t1 | TSS | g4211.t1 | 218497 | 218497 |
| chr_2 | g4211 | g4211.t1 | isoform | g4211.t1 | 218553 | 220126 |
| chr_2 | g4211 | g4211.t1 | exon | g4211.t1.exon1 | 218553 | 218616 |
| chr_2 | g4211 | g4211.t1 | cds | g4211.t1.CDS1 | 218553 | 218616 |
| chr_2 | g4211 | g4211.t1 | exon | g4211.t1.exon2 | 218687 | 218801 |
| chr_2 | g4211 | g4211.t1 | cds | g4211.t1.CDS2 | 218687 | 218801 |
| chr_2 | g4211 | g4211.t1 | exon | g4211.t1.exon3 | 218870 | 218928 |
| chr_2 | g4211 | g4211.t1 | cds | g4211.t1.CDS3 | 218870 | 218928 |
| chr_2 | g4211 | g4211.t1 | exon | g4211.t1.exon4 | 218992 | 219368 |
| chr_2 | g4211 | g4211.t1 | cds | g4211.t1.CDS4 | 218992 | 219368 |
| chr_2 | g4211 | g4211.t1 | exon | g4211.t1.exon5 | 219432 | 219484 |
| chr_2 | g4211 | g4211.t1 | cds | g4211.t1.CDS5 | 219432 | 219484 |
| chr_2 | g4211 | g4211.t1 | exon | g4211.t1.exon6 | 219536 | 219940 |
| chr_2 | g4211 | g4211.t1 | cds | g4211.t1.CDS6 | 219536 | 219940 |
| chr_2 | g4211 | g4211.t1 | exon | g4211.t1.exon7 | 220015 | 220126 |
| chr_2 | g4211 | g4211.t1 | cds | g4211.t1.CDS7 | 220015 | 220126 |
| chr_2 | g4211 | g4211.t1 | TTS | g4211.t1 | 220171 | 220171 |
Sequences
>g4211.t1 Gene=g4211 Length=1185
ATGGATGTGTCTAAACCAGACAATTTTAAAGTATCGTTGGATGTAATCGAGAAAACAATG
ACAGGCGCTGGACCTTCAAATTATCATCCACGAATTAGACAAGCAATGTCATTGCCAGTA
CTTGGACATCTTCATACTGAAACACTGAAAATTATGGACGATCTTAAAGAAGGGATAAAA
TATCTCTTTCAAACAAGAAATTCATTAACTTTTTGCGTCAGTGGACCTGGTCATGCCGCT
TTGGAATGTGCTTTAACAAATCTAATTGAAGAAAATGATGTTATTTTAATTGTTTGTTCT
GGTATCTGGGGAACACGGGCTGGTAATATAGCAAAGCGTTTGAACGCTAATGTGAAAATG
CTTTATAAGCATGTAGGTGAACAAGTTTCACTTAAAGAAACACGCGAATGTTTCAGAATG
TATAAGCCCAAAATTTTCTTCATGGTACATGGTGAATCTAGTACAGGAATGATACAAAAT
AATATCGAAGATTATGGGAATTTATGTCGAGAGTTTGATTGTCTTTTTATTGTCGATTGC
GTTATCACGCTTGGCTGCACACCACTCTTTGTCGATAAATGGAAGATTGATATAGCTTAT
ACAGGCACACAGAAGGTCTTAAATGCACCACCCGGTATTTCTCCAATCACATTCAGTCAA
CGAGCATACGATAAAATTGTCATGAGAAAATCATTAGTGAAGAGTTATAATTACGATGCG
ATTCTGCTTGGTGAATATTGGAATTGCTTTCCACTTCGTCCGCGAATTTACCACCATACA
ATCTGCTCTTCATTACTTTATGGCTTGCGAGAAGCAATTGCAATTTTTATTGAGAATGGT
GGATTAGAAGCATCATGGGAAAAGCATGGAAAGGTTACGAGAAAATTTCATTCTATACTA
GAAAAAAATGGTTTACAATTGTTCATTGAAAACGCAGAAAATAGATGTCCATCAGTGACA
TCAATCAAAGTTCCAGATAATATTGATACTCATAAAATTATAAGTTATGCGATGAACAAA
TATAAAGTTGAAATTGGTAATGGTGTGGGAATGACATTGGGTAAAATTTTCAGAATCGGT
CTTATGGGAGTAAACTGCAAAGATGAGCTTGCAGAGCGAGTGGCAAATATTCTCATCGAA
GCCATAAGAGCAATTGAAAATGAAAAGGTTGTATCAAAGATTTAA
>g4211.t1 Gene=g4211 Length=394
MDVSKPDNFKVSLDVIEKTMTGAGPSNYHPRIRQAMSLPVLGHLHTETLKIMDDLKEGIK
YLFQTRNSLTFCVSGPGHAALECALTNLIEENDVILIVCSGIWGTRAGNIAKRLNANVKM
LYKHVGEQVSLKETRECFRMYKPKIFFMVHGESSTGMIQNNIEDYGNLCREFDCLFIVDC
VITLGCTPLFVDKWKIDIAYTGTQKVLNAPPGISPITFSQRAYDKIVMRKSLVKSYNYDA
ILLGEYWNCFPLRPRIYHHTICSSLLYGLREAIAIFIENGGLEASWEKHGKVTRKFHSIL
EKNGLQLFIENAENRCPSVTSIKVPDNIDTHKIISYAMNKYKVEIGNGVGMTLGKIFRIG
LMGVNCKDELAERVANILIEAIRAIENEKVVSKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4211.t1 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 17 | 378 | 2.2E-136 |
| 7 | g4211.t1 | Gene3D | G3DSA:3.40.640.10 | - | 29 | 279 | 2.2E-136 |
| 2 | g4211.t1 | PANTHER | PTHR21152 | AMINOTRANSFERASE CLASS V | 6 | 392 | 1.4E-116 |
| 3 | g4211.t1 | PANTHER | PTHR21152:SF22 | SERINE–PYRUVATE AMINOTRANSFERASE | 6 | 392 | 1.4E-116 |
| 8 | g4211.t1 | PIRSF | PIRSF000524 | SPT | 13 | 393 | 1.5E-97 |
| 1 | g4211.t1 | Pfam | PF00266 | Aminotransferase class-V | 41 | 370 | 3.8E-38 |
| 5 | g4211.t1 | ProSitePatterns | PS00595 | Aminotransferases class-V pyridoxal-phosphate attachment site. | 196 | 216 | - |
| 4 | g4211.t1 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 20 | 381 | 9.35E-81 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00830 (alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed