Gene loci information

Transcript annotation

  • This transcript has been annotated as Serine–pyruvate aminotransferase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4211 g4211.t10 TSS g4211.t10 218497 218497
chr_2 g4211 g4211.t10 isoform g4211.t10 218553 220126
chr_2 g4211 g4211.t10 exon g4211.t10.exon1 218553 218616
chr_2 g4211 g4211.t10 cds g4211.t10.CDS1 218553 218616
chr_2 g4211 g4211.t10 exon g4211.t10.exon2 218687 218801
chr_2 g4211 g4211.t10 cds g4211.t10.CDS2 218687 218801
chr_2 g4211 g4211.t10 exon g4211.t10.exon3 218870 218928
chr_2 g4211 g4211.t10 cds g4211.t10.CDS3 218870 218928
chr_2 g4211 g4211.t10 exon g4211.t10.exon4 218992 219418
chr_2 g4211 g4211.t10 cds g4211.t10.CDS4 218992 219398
chr_2 g4211 g4211.t10 exon g4211.t10.exon5 219536 219940
chr_2 g4211 g4211.t10 exon g4211.t10.exon6 220015 220126
chr_2 g4211 g4211.t10 TTS g4211.t10 220171 220171

Sequences

>g4211.t10 Gene=g4211 Length=1182
ATGGATGTGTCTAAACCAGACAATTTTAAAGTATCGTTGGATGTAATCGAGAAAACAATG
ACAGGCGCTGGACCTTCAAATTATCATCCACGAATTAGACAAGCAATGTCATTGCCAGTA
CTTGGACATCTTCATACTGAAACACTGAAAATTATGGACGATCTTAAAGAAGGGATAAAA
TATCTCTTTCAAACAAGAAATTCATTAACTTTTTGCGTCAGTGGACCTGGTCATGCCGCT
TTGGAATGTGCTTTAACAAATCTAATTGAAGAAAATGATGTTATTTTAATTGTTTGTTCT
GGTATCTGGGGAACACGGGCTGGTAATATAGCAAAGCGTTTGAACGCTAATGTGAAAATG
CTTTATAAGCATGTAGGTGAACAAGTTTCACTTAAAGAAACACGCGAATGTTTCAGAATG
TATAAGCCCAAAATTTTCTTCATGGTACATGGTGAATCTAGTACAGGAATGATACAAAAT
AATATCGAAGATTATGGGAATTTATGTCGAGAGTTTGATTGTCTTTTTATTGTCGATTGC
GTTATCACGCTTGGCTGCACACCACTCTTTGTCGATAAATGGAAGATTGATATAGCTTAT
ACAGGCACACAGAAGGTTGTTCATAAATATTCCTTAAATTGTTAATGCTAGCAAAAACTA
ATTAGCGATAAAATTGTCATGAGAAAATCATTAGTGAAGAGTTATAATTACGATGCGATT
CTGCTTGGTGAATATTGGAATTGCTTTCCACTTCGTCCGCGAATTTACCACCATACAATC
TGCTCTTCATTACTTTATGGCTTGCGAGAAGCAATTGCAATTTTTATTGAGAATGGTGGA
TTAGAAGCATCATGGGAAAAGCATGGAAAGGTTACGAGAAAATTTCATTCTATACTAGAA
AAAAATGGTTTACAATTGTTCATTGAAAACGCAGAAAATAGATGTCCATCAGTGACATCA
ATCAAAGTTCCAGATAATATTGATACTCATAAAATTATAAGTTATGCGATGAACAAATAT
AAAGTTGAAATTGGTAATGGTGTGGGAATGACATTGGGTAAAATTTTCAGAATCGGTCTT
ATGGGAGTAAACTGCAAAGATGAGCTTGCAGAGCGAGTGGCAAATATTCTCATCGAAGCC
ATAAGAGCAATTGAAAATGAAAAGGTTGTATCAAAGATTTAA

>g4211.t10 Gene=g4211 Length=214
MDVSKPDNFKVSLDVIEKTMTGAGPSNYHPRIRQAMSLPVLGHLHTETLKIMDDLKEGIK
YLFQTRNSLTFCVSGPGHAALECALTNLIEENDVILIVCSGIWGTRAGNIAKRLNANVKM
LYKHVGEQVSLKETRECFRMYKPKIFFMVHGESSTGMIQNNIEDYGNLCREFDCLFIVDC
VITLGCTPLFVDKWKIDIAYTGTQKVVHKYSLNC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g4211.t10 Gene3D G3DSA:3.40.640.10 - 9 209 0
2 g4211.t10 PANTHER PTHR21152 AMINOTRANSFERASE CLASS V 5 208 0
3 g4211.t10 PANTHER PTHR21152:SF22 SERINE–PYRUVATE AMINOTRANSFERASE 5 208 0
1 g4211.t10 Pfam PF00266 Aminotransferase class-V 41 206 0
4 g4211.t10 SUPERFAMILY SSF53383 PLP-dependent transferases 20 206 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed