Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine–pyruvate aminotransferase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4211 g4211.t13 TSS g4211.t13 218497 218497
chr_2 g4211 g4211.t13 isoform g4211.t13 218553 220126
chr_2 g4211 g4211.t13 exon g4211.t13.exon1 218553 219484
chr_2 g4211 g4211.t13 exon g4211.t13.exon2 219536 219940
chr_2 g4211 g4211.t13 cds g4211.t13.CDS1 219549 219940
chr_2 g4211 g4211.t13 exon g4211.t13.exon3 220015 220126
chr_2 g4211 g4211.t13 cds g4211.t13.CDS2 220015 220126
chr_2 g4211 g4211.t13 TTS g4211.t13 220171 220171

Sequences

>g4211.t13 Gene=g4211 Length=1449
ATGGATGTGTCTAAACCAGACAATTTTAAAGTATCGTTGGATGTAATCGAGAAAACAATG
ACAGGTATGAACTGTTACATTTGAAAAATAAATTAATCTTAATCAATACTAAATAAATTC
AACAAAAAATGAAGGCGCTGGACCTTCAAATTATCATCCACGAATTAGACAAGCAATGTC
ATTGCCAGTACTTGGACATCTTCATACTGAAACACTGAAAATTATGGACGATCTTAAAGA
AGGGATAAAGTAATTTTAAATTTTTTATTCATATAGTCATCGTGTCAAGTGCTATAAATT
TTCATTATCTCTCTTAGATATCTCTTTCAAACAAGAAATTCATTAACTTTTTGCGTCAGT
GGACCTGGTCATGCCGGTATTAATCGTTTTTATAATCAATAAAACAGTTTTTAATTTAAC
TTTAATTTTATATATGTAGCTTTGGAATGTGCTTTAACAAATCTAATTGAAGAAAATGAT
GTTATTTTAATTGTTTGTTCTGGTATCTGGGGAACACGGGCTGGTAATATAGCAAAGCGT
TTGAACGCTAATGTGAAAATGCTTTATAAGCATGTAGGTGAACAAGTTTCACTTAAAGAA
ACACGCGAATGTTTCAGAATGTATAAGCCCAAAATTTTCTTCATGGTACATGGTGAATCT
AGTACAGGAATGATACAAAATAATATCGAAGATTATGGGAATTTATGTCGAGAGTTTGAT
TGTCTTTTTATTGTCGATTGCGTTATCACGCTTGGCTGCACACCACTCTTTGTCGATAAA
TGGAAGATTGATATAGCTTATACAGGCACACAGAAGGTTGTTCATAAATATTCCTTAAAT
TGTTAATGCTAGCAAAAACTAATTAGGTGAAAGTTCTAGGTCTTAAATGCACCACCCGGT
ATTTCTCCAATCACATTCAGTCAACGAGCATACGATAAAATTGTCATGAGAAAATCATTA
GTGAAGAGTTATAATTACGATGCGATTCTGCTTGGTGAATATTGGAATTGCTTTCCACTT
CGTCCGCGAATTTACCACCATACAATCTGCTCTTCATTACTTTATGGCTTGCGAGAAGCA
ATTGCAATTTTTATTGAGAATGGTGGATTAGAAGCATCATGGGAAAAGCATGGAAAGGTT
ACGAGAAAATTTCATTCTATACTAGAAAAAAATGGTTTACAATTGTTCATTGAAAACGCA
GAAAATAGATGTCCATCAGTGACATCAATCAAAGTTCCAGATAATATTGATACTCATAAA
ATTATAAGTTATGCGATGAACAAATATAAAGTTGAAATTGGTAATGGTGTGGGAATGACA
TTGGGTAAAATTTTCAGAATCGGTCTTATGGGAGTAAACTGCAAAGATGAGCTTGCAGAG
CGAGTGGCAAATATTCTCATCGAAGCCATAAGAGCAATTGAAAATGAAAAGGTTGTATCA
AAGATTTAA

>g4211.t13 Gene=g4211 Length=167
MRKSLVKSYNYDAILLGEYWNCFPLRPRIYHHTICSSLLYGLREAIAIFIENGGLEASWE
KHGKVTRKFHSILEKNGLQLFIENAENRCPSVTSIKVPDNIDTHKIISYAMNKYKVEIGN
GVGMTLGKIFRIGLMGVNCKDELAERVANILIEAIRAIENEKVVSKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g4211.t13 Gene3D G3DSA:3.40.640.10 - 2 52 0
5 g4211.t13 Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase 54 151 0
2 g4211.t13 PANTHER PTHR21152 AMINOTRANSFERASE CLASS V 3 165 0
3 g4211.t13 PANTHER PTHR21152:SF22 SERINE–PYRUVATE AMINOTRANSFERASE 3 165 0
1 g4211.t13 Pfam PF00266 Aminotransferase class-V 27 143 0
4 g4211.t13 SUPERFAMILY SSF53383 PLP-dependent transferases 6 156 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed