General information for g4211.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine–pyruvate aminotransferase, mitochondrial.
Parent gene
- The parent gene g4211 is located on chr_2: 219582..225289 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4211 | g4211.t15 | TSS | g4211.t15 | 218497 | 218497 |
| chr_2 | g4211 | g4211.t15 | isoform | g4211.t15 | 218690 | 220126 |
| chr_2 | g4211 | g4211.t15 | exon | g4211.t15.exon1 | 218690 | 218801 |
| chr_2 | g4211 | g4211.t15 | cds | g4211.t15.CDS1 | 218728 | 218801 |
| chr_2 | g4211 | g4211.t15 | exon | g4211.t15.exon2 | 218870 | 218928 |
| chr_2 | g4211 | g4211.t15 | cds | g4211.t15.CDS2 | 218870 | 218928 |
| chr_2 | g4211 | g4211.t15 | exon | g4211.t15.exon3 | 218992 | 219368 |
| chr_2 | g4211 | g4211.t15 | cds | g4211.t15.CDS3 | 218992 | 219368 |
| chr_2 | g4211 | g4211.t15 | exon | g4211.t15.exon4 | 219432 | 219484 |
| chr_2 | g4211 | g4211.t15 | cds | g4211.t15.CDS4 | 219432 | 219484 |
| chr_2 | g4211 | g4211.t15 | exon | g4211.t15.exon5 | 219536 | 219940 |
| chr_2 | g4211 | g4211.t15 | cds | g4211.t15.CDS5 | 219536 | 219940 |
| chr_2 | g4211 | g4211.t15 | exon | g4211.t15.exon6 | 220015 | 220126 |
| chr_2 | g4211 | g4211.t15 | cds | g4211.t15.CDS6 | 220015 | 220126 |
| chr_2 | g4211 | g4211.t15 | TTS | g4211.t15 | 220171 | 220171 |
Sequences
>g4211.t15 Gene=g4211 Length=1118
CTGGACCTTCAAATTATCATCCACGAATTAGACAAGCAATGTCATTGCCAGTACTTGGAC
ATCTTCATACTGAAACACTGAAAATTATGGACGATCTTAAAGAAGGGATAAAATATCTCT
TTCAAACAAGAAATTCATTAACTTTTTGCGTCAGTGGACCTGGTCATGCCGCTTTGGAAT
GTGCTTTAACAAATCTAATTGAAGAAAATGATGTTATTTTAATTGTTTGTTCTGGTATCT
GGGGAACACGGGCTGGTAATATAGCAAAGCGTTTGAACGCTAATGTGAAAATGCTTTATA
AGCATGTAGGTGAACAAGTTTCACTTAAAGAAACACGCGAATGTTTCAGAATGTATAAGC
CCAAAATTTTCTTCATGGTACATGGTGAATCTAGTACAGGAATGATACAAAATAATATCG
AAGATTATGGGAATTTATGTCGAGAGTTTGATTGTCTTTTTATTGTCGATTGCGTTATCA
CGCTTGGCTGCACACCACTCTTTGTCGATAAATGGAAGATTGATATAGCTTATACAGGCA
CACAGAAGGTCTTAAATGCACCACCCGGTATTTCTCCAATCACATTCAGTCAACGAGCAT
ACGATAAAATTGTCATGAGAAAATCATTAGTGAAGAGTTATAATTACGATGCGATTCTGC
TTGGTGAATATTGGAATTGCTTTCCACTTCGTCCGCGAATTTACCACCATACAATCTGCT
CTTCATTACTTTATGGCTTGCGAGAAGCAATTGCAATTTTTATTGAGAATGGTGGATTAG
AAGCATCATGGGAAAAGCATGGAAAGGTTACGAGAAAATTTCATTCTATACTAGAAAAAA
ATGGTTTACAATTGTTCATTGAAAACGCAGAAAATAGATGTCCATCAGTGACATCAATCA
AAGTTCCAGATAATATTGATACTCATAAAATTATAAGTTATGCGATGAACAAATATAAAG
TTGAAATTGGTAATGGTGTGGGAATGACATTGGGTAAAATTTTCAGAATCGGTCTTATGG
GAGTAAACTGCAAAGATGAGCTTGCAGAGCGAGTGGCAAATATTCTCATCGAAGCCATAA
GAGCAATTGAAAATGAAAAGGTTGTATCAAAGATTTAA
>g4211.t15 Gene=g4211 Length=359
MSLPVLGHLHTETLKIMDDLKEGIKYLFQTRNSLTFCVSGPGHAALECALTNLIEENDVI
LIVCSGIWGTRAGNIAKRLNANVKMLYKHVGEQVSLKETRECFRMYKPKIFFMVHGESST
GMIQNNIEDYGNLCREFDCLFIVDCVITLGCTPLFVDKWKIDIAYTGTQKVLNAPPGISP
ITFSQRAYDKIVMRKSLVKSYNYDAILLGEYWNCFPLRPRIYHHTICSSLLYGLREAIAI
FIENGGLEASWEKHGKVTRKFHSILEKNGLQLFIENAENRCPSVTSIKVPDNIDTHKIIS
YAMNKYKVEIGNGVGMTLGKIFRIGLMGVNCKDELAERVANILIEAIRAIENEKVVSKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g4211.t15 | Gene3D | G3DSA:3.40.640.10 | - | 1 | 244 | 2.2E-127 |
| 6 | g4211.t15 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 246 | 343 | 2.2E-127 |
| 2 | g4211.t15 | PANTHER | PTHR21152 | AMINOTRANSFERASE CLASS V | 4 | 357 | 3.6E-109 |
| 3 | g4211.t15 | PANTHER | PTHR21152:SF22 | SERINE–PYRUVATE AMINOTRANSFERASE | 4 | 357 | 3.6E-109 |
| 8 | g4211.t15 | PIRSF | PIRSF000524 | SPT | 1 | 358 | 2.4E-91 |
| 1 | g4211.t15 | Pfam | PF00266 | Aminotransferase class-V | 7 | 335 | 3.7E-38 |
| 5 | g4211.t15 | ProSitePatterns | PS00595 | Aminotransferases class-V pyridoxal-phosphate attachment site. | 161 | 181 | - |
| 4 | g4211.t15 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 3 | 348 | 3.34E-75 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00830 (alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
