General information for g4211.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4211 is located on chr_2: 219582..225289 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4211 | g4211.t18 | isoform | g4211.t18 | 219582 | 220126 |
| chr_2 | g4211 | g4211.t18 | exon | g4211.t18.exon1 | 219582 | 219940 |
| chr_2 | g4211 | g4211.t18 | cds | g4211.t18.CDS1 | 219879 | 219940 |
| chr_2 | g4211 | g4211.t18 | exon | g4211.t18.exon2 | 220015 | 220126 |
| chr_2 | g4211 | g4211.t18 | cds | g4211.t18.CDS2 | 220015 | 220126 |
| chr_2 | g4211 | g4211.t18 | TTS | g4211.t18 | 220171 | 220171 |
| chr_2 | g4211 | g4211.t18 | TSS | g4211.t18 | NA | NA |
Sequences
>g4211.t18 Gene=g4211 Length=471
GATGCGATTCTGCTTGGTGAATATTGGAATTGCTTTCCACTTCGTCCGCGAATTTACCAC
CATACAATCTGCTCTTCATTACTTTATGGCTTGCGAGAAGCAATTGCAATTTTTATTGAG
AATGGTGGATTAGAAGCATCATGGGAAAAGCATGGAAAGGTTACGAGAAAATTTCATTCT
ATACTAGAAAAAAATGGTTTACAATTGTTCATTGAAAACGCAGAAAATAGATGTCCATCA
GTGACATCAATCAAAGTTCCAGATAATATTGATACTCATAAAATTATAAGTTATGCGATG
AACAAATATAAAGTTGAAATTGGTAATGGTGTGGGAATGACATTGGGTAAAATTTTCAGA
ATCGGTCTTATGGGAGTAAACTGCAAAGATGAGCTTGCAGAGCGAGTGGCAAATATTCTC
ATCGAAGCCATAAGAGCAATTGAAAATGAAAAGGTTGTATCAAAGATTTAA
>g4211.t18 Gene=g4211 Length=57
MNKYKVEIGNGVGMTLGKIFRIGLMGVNCKDELAERVANILIEAIRAIENEKVVSKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g4211.t18 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 1 | 56 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed