General information for g4211.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine–pyruvate aminotransferase.
Parent gene
- The parent gene g4211 is located on chr_2: 219582..225289 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4211 | g4211.t9 | TSS | g4211.t9 | 218497 | 218497 |
| chr_2 | g4211 | g4211.t9 | isoform | g4211.t9 | 218553 | 220126 |
| chr_2 | g4211 | g4211.t9 | exon | g4211.t9.exon1 | 218553 | 218616 |
| chr_2 | g4211 | g4211.t9 | cds | g4211.t9.CDS1 | 218553 | 218616 |
| chr_2 | g4211 | g4211.t9 | exon | g4211.t9.exon2 | 218684 | 218801 |
| chr_2 | g4211 | g4211.t9 | cds | g4211.t9.CDS2 | 218684 | 218801 |
| chr_2 | g4211 | g4211.t9 | exon | g4211.t9.exon3 | 218870 | 218928 |
| chr_2 | g4211 | g4211.t9 | cds | g4211.t9.CDS3 | 218870 | 218928 |
| chr_2 | g4211 | g4211.t9 | exon | g4211.t9.exon4 | 218992 | 219368 |
| chr_2 | g4211 | g4211.t9 | cds | g4211.t9.CDS4 | 218992 | 219368 |
| chr_2 | g4211 | g4211.t9 | exon | g4211.t9.exon5 | 219432 | 219484 |
| chr_2 | g4211 | g4211.t9 | cds | g4211.t9.CDS5 | 219432 | 219484 |
| chr_2 | g4211 | g4211.t9 | exon | g4211.t9.exon6 | 219536 | 219940 |
| chr_2 | g4211 | g4211.t9 | cds | g4211.t9.CDS6 | 219536 | 219940 |
| chr_2 | g4211 | g4211.t9 | exon | g4211.t9.exon7 | 220015 | 220126 |
| chr_2 | g4211 | g4211.t9 | cds | g4211.t9.CDS7 | 220015 | 220126 |
| chr_2 | g4211 | g4211.t9 | TTS | g4211.t9 | 220171 | 220171 |
Sequences
>g4211.t9 Gene=g4211 Length=1188
ATGGATGTGTCTAAACCAGACAATTTTAAAGTATCGTTGGATGTAATCGAGAAAACAATG
ACAGAAGGCGCTGGACCTTCAAATTATCATCCACGAATTAGACAAGCAATGTCATTGCCA
GTACTTGGACATCTTCATACTGAAACACTGAAAATTATGGACGATCTTAAAGAAGGGATA
AAATATCTCTTTCAAACAAGAAATTCATTAACTTTTTGCGTCAGTGGACCTGGTCATGCC
GCTTTGGAATGTGCTTTAACAAATCTAATTGAAGAAAATGATGTTATTTTAATTGTTTGT
TCTGGTATCTGGGGAACACGGGCTGGTAATATAGCAAAGCGTTTGAACGCTAATGTGAAA
ATGCTTTATAAGCATGTAGGTGAACAAGTTTCACTTAAAGAAACACGCGAATGTTTCAGA
ATGTATAAGCCCAAAATTTTCTTCATGGTACATGGTGAATCTAGTACAGGAATGATACAA
AATAATATCGAAGATTATGGGAATTTATGTCGAGAGTTTGATTGTCTTTTTATTGTCGAT
TGCGTTATCACGCTTGGCTGCACACCACTCTTTGTCGATAAATGGAAGATTGATATAGCT
TATACAGGCACACAGAAGGTCTTAAATGCACCACCCGGTATTTCTCCAATCACATTCAGT
CAACGAGCATACGATAAAATTGTCATGAGAAAATCATTAGTGAAGAGTTATAATTACGAT
GCGATTCTGCTTGGTGAATATTGGAATTGCTTTCCACTTCGTCCGCGAATTTACCACCAT
ACAATCTGCTCTTCATTACTTTATGGCTTGCGAGAAGCAATTGCAATTTTTATTGAGAAT
GGTGGATTAGAAGCATCATGGGAAAAGCATGGAAAGGTTACGAGAAAATTTCATTCTATA
CTAGAAAAAAATGGTTTACAATTGTTCATTGAAAACGCAGAAAATAGATGTCCATCAGTG
ACATCAATCAAAGTTCCAGATAATATTGATACTCATAAAATTATAAGTTATGCGATGAAC
AAATATAAAGTTGAAATTGGTAATGGTGTGGGAATGACATTGGGTAAAATTTTCAGAATC
GGTCTTATGGGAGTAAACTGCAAAGATGAGCTTGCAGAGCGAGTGGCAAATATTCTCATC
GAAGCCATAAGAGCAATTGAAAATGAAAAGGTTGTATCAAAGATTTAA
>g4211.t9 Gene=g4211 Length=395
MDVSKPDNFKVSLDVIEKTMTEGAGPSNYHPRIRQAMSLPVLGHLHTETLKIMDDLKEGI
KYLFQTRNSLTFCVSGPGHAALECALTNLIEENDVILIVCSGIWGTRAGNIAKRLNANVK
MLYKHVGEQVSLKETRECFRMYKPKIFFMVHGESSTGMIQNNIEDYGNLCREFDCLFIVD
CVITLGCTPLFVDKWKIDIAYTGTQKVLNAPPGISPITFSQRAYDKIVMRKSLVKSYNYD
AILLGEYWNCFPLRPRIYHHTICSSLLYGLREAIAIFIENGGLEASWEKHGKVTRKFHSI
LEKNGLQLFIENAENRCPSVTSIKVPDNIDTHKIISYAMNKYKVEIGNGVGMTLGKIFRI
GLMGVNCKDELAERVANILIEAIRAIENEKVVSKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4211.t9 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 18 | 379 | 5.2E-135 |
| 7 | g4211.t9 | Gene3D | G3DSA:3.40.640.10 | - | 30 | 280 | 5.2E-135 |
| 2 | g4211.t9 | PANTHER | PTHR21152 | AMINOTRANSFERASE CLASS V | 15 | 393 | 3.4E-115 |
| 3 | g4211.t9 | PANTHER | PTHR21152:SF22 | SERINE–PYRUVATE AMINOTRANSFERASE | 15 | 393 | 3.4E-115 |
| 8 | g4211.t9 | PIRSF | PIRSF000524 | SPT | 15 | 394 | 3.2E-97 |
| 1 | g4211.t9 | Pfam | PF00266 | Aminotransferase class-V | 42 | 371 | 3.8E-38 |
| 5 | g4211.t9 | ProSitePatterns | PS00595 | Aminotransferases class-V pyridoxal-phosphate attachment site. | 197 | 217 | - |
| 4 | g4211.t9 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 22 | 384 | 1.93E-80 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00830 (alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed