General information for g4252.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4252 is located on chr_2: 651002..651721 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4252 | g4252.t1 | isoform | g4252.t1 | 651002 | 651721 |
| chr_2 | g4252 | g4252.t1 | exon | g4252.t1.exon1 | 651002 | 651721 |
| chr_2 | g4252 | g4252.t1 | cds | g4252.t1.CDS1 | 651002 | 651721 |
| chr_2 | g4252 | g4252.t1 | TSS | g4252.t1 | NA | NA |
| chr_2 | g4252 | g4252.t1 | TTS | g4252.t1 | NA | NA |
Sequences
>g4252.t1 Gene=g4252 Length=720
ATGCAATCAACAGCAATATTCGTAGAGAGTTCATTAGTGGCGGTAAGAAATGTAATTAAC
AATGTACAATTAAACGCCAAGCCTTTGCTGAAATTGGCTGGCAAAAAAGTTCAAGTAATT
TGTAGCAATCAAGCTGACAAATTTAAAATTTTGGAGAAACTCAAGTCACAACAGTTTCGT
TTTCACTCATTCACTGAAAATCATAACAAATCACGAGTAGTCTTATTGAAAGGTTTTTAC
CTTGATATCAATTCTGATGAAAAGACTCAATTAGACGAGCTAAAGCAATTGTTGGTCAAT
AAAGGACTCAAGGTAAATTCTGTGAGAATCTTCTTCAAAAAGGAAGATTTTGCGATATTC
TCAATTGGTTTGCAACATAACATTTCATTGAAGGAGCTCAACTATCAATATAAGGATGTT
GATTCAATTATCGTTCGTTGGGAAGCTATTAATAGAGAGATGAAGAAGCCAACTCAGTGC
TTCAAGTGCCAACAATTTGGACATTCTTCTCACAATTGTGGATATGAAGCAAGATGCGTG
AAGTGCTTGGAGAAGCACGAAATTGGTCAATGCAATCGTGTCAACAGAAATGATGGTACT
CCAAGCTGTGTTAACTGCTCTGGAGACCACCCAGCTAATTTTAAAGGATGTCCAGCATTC
AAATCCTACGTAGAAAAAATTGAGAAATCAAAGAAAAAAAAAAGCTCCAGCTTTGACTAA
>g4252.t1 Gene=g4252 Length=239
MQSTAIFVESSLVAVRNVINNVQLNAKPLLKLAGKKVQVICSNQADKFKILEKLKSQQFR
FHSFTENHNKSRVVLLKGFYLDINSDEKTQLDELKQLLVNKGLKVNSVRIFFKKEDFAIF
SIGLQHNISLKELNYQYKDVDSIIVRWEAINREMKKPTQCFKCQQFGHSSHNCGYEARCV
KCLEKHEIGQCNRVNRNDGTPSCVNCSGDHPANFKGCPAFKSYVEKIEKSKKKKSSSFD
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
