General information for g4256.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Leucine-rich repeat-containing G-protein coupled receptor 5.
Parent gene
- The parent gene g4256 is located on chr_2: 715209..718405 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4256 | g4256.t1 | isoform | g4256.t1 | 690324 | 715209 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon1 | 690324 | 690697 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS1 | 690324 | 690697 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon2 | 707069 | 707140 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS2 | 707069 | 707140 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon3 | 707267 | 707410 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS3 | 707267 | 707410 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon4 | 708009 | 708155 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS4 | 708009 | 708155 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon5 | 709557 | 709628 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS5 | 709557 | 709628 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon6 | 709695 | 709766 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS6 | 709695 | 709766 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon7 | 709989 | 710060 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS7 | 709989 | 710060 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon8 | 710234 | 710365 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS8 | 710234 | 710365 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon9 | 710502 | 710642 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS9 | 710502 | 710642 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon10 | 710715 | 710924 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS10 | 710715 | 710924 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon11 | 712541 | 712612 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS11 | 712541 | 712612 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon12 | 712720 | 713213 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS12 | 712720 | 713213 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon13 | 713283 | 714087 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS13 | 713283 | 714087 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon14 | 714152 | 714870 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS14 | 714152 | 714870 |
| chr_2 | g4256 | g4256.t1 | exon | g4256.t1.exon15 | 714932 | 715209 |
| chr_2 | g4256 | g4256.t1 | cds | g4256.t1.CDS15 | 714932 | 715209 |
| chr_2 | g4256 | g4256.t1 | TTS | g4256.t1 | 716128 | 716128 |
| chr_2 | g4256 | g4256.t1 | TSS | g4256.t1 | NA | NA |
Sequences
>g4256.t1 Gene=g4256 Length=3804
ATGGCTCATATTACTCGCATATCATTTCGAACTATTTATTTACCAAGAAGCCATTTATTA
TTAATTACTTTTATCCTCTTAAGCTTTTCAAAATGCAATGAGACATTATCAAAAATACAA
TCATCTGATAAAATTTTACTCCAAGAGTCTGTTGTCATTCCTTCCTCAAAGAATGCAGAA
GATGAGGCAAAAAAACTCTATCAAGAGGCTTTAAAGCAATATGGTGATTTAGGAAAAACT
TTAAAAGAAATTTGTGAACCATGGAAGACACGGGGTTGTATTTGTATAGGAACATCTGAA
GAAGTGACGCTCACTTGTCGACATGTCGGTTTTAAAAATGTTCCACTAAATCTACCACAG
GAACTCATAAAATTAGATTTGGGAAGTAACAATATAACAGTATTAAAGAATCATTCATTC
ACATCTCTACCAATATTGGAAGAACTAGTACTGTCAGATAATAGATTAACTACAATTGAA
AAAGATGCCTTCACTGGATTAAATAACCTGAAACGACTTGTATTACAGAACTGCGATCTC
ATACGTCTTCCCATTGATGCTTTCGAAAGTATTAAAAGTTTGACATCACTACATTTAGAC
AACAATGCAATTGAAACTTTCGATAACATTACATTAAGTCATCTTCATAGTTTGCAAATT
TTACGTTTAGAAGGAAATTTGTTGAGACGTGTTCCATCAAAAATTTTATTCAGTTTATCT
GCAACTTTGGAAGCTTTAAATCTCGCAAATAACAGACTAACTCAACTTGACAATGAAGAT
TTTCCGGTGATTAAAAATTTGCAATATTTGTTTCTCAAACGCAATAAAATACGAGAGATA
TCGTCGGGTGTATTCAGAAATCTTGCCAAATTAAAAGTGCTTGATCTGGATGACAATCAA
CTCGAGTCCTTATCGTCAATTGGATTGAAAAATTTGACCCAGTTACAAGAGCTAATGCTC
TCTAATAATAAAATAATGTCTATTGAAAATTTGCCATTGAATCTAGTGACTCTTGAATTA
AGAGCCAATCCATTGAGAAACTTTCATGAAAGTGCCATAAAAAATTTAAAAAGATTGAAA
AAGTTAGTATTATCTGATTCTCGTCATTTAAAAGAGTTACCATCATTTGAGGGTTGTGCT
TCATTAGAAACATTGAGAGTCGACCATGCTGATTTAAGTCAAATTCCCGAAGCATTATGC
ACTCATTCGCCGCGATTAAAGAGTCTTGAACTGAAATTCAACAAGTTAAGACATGTTCCA
AATTTAAAACAATGCTATGAATTGCGACTGTTGAATTTGGCATCAAACAAGATTTCGTCC
CTTCATAATAAGCCATTTGAGAATTTAAGCCAATTACATGATCTCCTGATACCATATAAT
CAAATCGAAACAATTCCACTTGATGCATTCAGTGGATTAAAAAGATTACAAACATTAGAC
CTAGAAGGCAACAACATCAATTTCATTCATGAGCAAGCATTTTCAAGCTTCACTCAATTG
GAAGATTTGAATCTTGGTGAAAATATTTTTCCAACATTGCCAACAGACGGTTTGCAGCGT
TTACTTCATTTAAAAACATTTAATAATCCAAGACTGAGAATTTTTCCACCGATTGAAGCT
TTTCCACGCATAAGAACACTTGTACTGTCTTATGCCTATCATTGCTGTGCATTTTTACCT
CTACTGACAAGTAACAGAAAAGTTATTGGCAGTCCTTATAAAGAAGAAGTATTTTTCCCA
ACTGATGAAAAATTTGATATGTCGATGTGGAATAATTCAATAAATGACATTTGGCCAGAT
TTAAATATAAACTTTACGAGTGCATTTCACTCACAAATGGATGACATTCTACAATCATAT
TCAAATCCTTATGCTGATTTTGGCTATCCAAGTATAACGAATTATCCTGAAAATGATATG
TACAATGGTGAAGAGTCGAGTGTTGTTCAGGTTCAATCTTATGAAACAAATCCAATGCTT
GTTAAATGTCTACCGACACCTGGACCTTTTCTTCCTTGTGAAGATCTCTTTGATTGGTGG
ACACTTAGATGTGGTGTATGGGTTGTCTTTTTACTTGCTCTTTTGGGAAATGGAATTGTT
GTATTTGTATTAATATTTTCTCGATCAAAAATGGATGTACCGAGATTTCTTGTATGTAAT
TTAGCTGCAGCAGATTTCTTCATGGGTATTTATTTGGGTTTTTTGGCTGTCATCGATGCC
TCAACTTTGGGTGAATTTCGTATGTATGCGATTCGATGGCAAATGAGTGTTGGTTGTCAA
TTAAGTGGATTTTTAGCTGTTTTTTCATCAGAATTATCTGTATATACATTAGCGGTTATT
ACATTAGAGAGAAATTATGCAATTACACATGCAATGCATTTGAATAAACGACTATCGCTG
CGCCATGCGAGTTACATTATGAGCATAGGTTGGATTTTTGCACTAACTATGGCAGTTCTT
CCTCTTTTTGGAGTATCTGATTATCGAAAATATTCTGTATGTCTACCAATGGAGGTTTAT
AAAGGATATGGAAGCTTAACATATGTAATATTTCTAATGTTTATCAATGGAGTAGCATTT
CTTACATTAATGGGATGCTATTTAAAAATGTATTGTGCAATTCGTGGCTCACAAGCGTGG
AATTCAAATGATTCGAGAATCGCAAAGAGAATGGCTTTATTAGTATTTACAGATTTTCTT
TGTTGGTCACCAATTGCCTTTTTTTCTATTGCTACAGTGCTCGGATGGCAATTGGTCACA
CTTGAACAAGCAAAAGTTTTCACAGTCTTCATATTACCCTTAAATAGTTGCTGTAATCCC
TTTCTCTATGCAATTTTAACAAAGCAATTCAAAAAAGATTGTGTGATGCTTTGCAAAGCA
ATAGAAGAGTCACGTGTGACGCGAGGTATCGGGAGATGTCGACATAGTTCGAATTTTTCA
AATCGTCAAACGCCGGGAAATACAAACTCATTAAATGAACGCTCTTCTCGCGAATTACCT
CCGTTACTTCCAGCTCATGTATGTAATTGTAATCGTGGCAAGATTATTGATCAAGAGGAA
GTTAAACGTCAATTAAAAGTATCATCTCAACCAAACATGATGGCTAGATTTTGGAAGAGA
TTATTTTGTAGTGATGGAAAAAAGTTCGAAAGGCGAAATCATAGACACATGGACTATTCT
TATCATATTGCTGAAATTAAACAAAAGAACCATCATAAAAGAGCAGGATCAATGTCTTCG
AGTGATGGAAATTTCAGTTCATCGCGTTCTGATTCATGGAAACATGGCACTCCACATCAT
TGTGGTGTACCTCTGAGATTACTTGATCCAAGAAGAAGACATACATCGTGGTTGATTACA
AGAAAAACTTCACAAGACTCAAATCTTTCCAGTTCAAGAAATGATTCGTCTGGTTCTAAT
AACACGACTGCAACTACAGCAAGTTCAACTTGGCGTATTTCACGTTCTAATGGTTCAAAT
ATTGTAATTCCTGGTTTGAATATACCTCCTTCTTTTGCCACATCAAATTCTAGTCGTCAA
TCATTACCAGGAAGCAAACCTCGGTTGGTACGTCAATCAGCATTTCATGATGAAACACAA
GAGCCGGCAACACTACTAGGTGTGAGATATCTTCCGACAATACCCTCTGCACCTGATTCG
AGTGTGCAATTAGATGATGAAAATGAGAGTGAAAATTTTTTAGTTAATCAGGAATGTGTT
CATTTACAAAATCAACAAACATACCCTACTGCCACAACAGAGAATTCAGAAAATCTGTCT
AGTCCTCAAAGCAAGCCGCCATGA
>g4256.t1 Gene=g4256 Length=1267
MAHITRISFRTIYLPRSHLLLITFILLSFSKCNETLSKIQSSDKILLQESVVIPSSKNAE
DEAKKLYQEALKQYGDLGKTLKEICEPWKTRGCICIGTSEEVTLTCRHVGFKNVPLNLPQ
ELIKLDLGSNNITVLKNHSFTSLPILEELVLSDNRLTTIEKDAFTGLNNLKRLVLQNCDL
IRLPIDAFESIKSLTSLHLDNNAIETFDNITLSHLHSLQILRLEGNLLRRVPSKILFSLS
ATLEALNLANNRLTQLDNEDFPVIKNLQYLFLKRNKIREISSGVFRNLAKLKVLDLDDNQ
LESLSSIGLKNLTQLQELMLSNNKIMSIENLPLNLVTLELRANPLRNFHESAIKNLKRLK
KLVLSDSRHLKELPSFEGCASLETLRVDHADLSQIPEALCTHSPRLKSLELKFNKLRHVP
NLKQCYELRLLNLASNKISSLHNKPFENLSQLHDLLIPYNQIETIPLDAFSGLKRLQTLD
LEGNNINFIHEQAFSSFTQLEDLNLGENIFPTLPTDGLQRLLHLKTFNNPRLRIFPPIEA
FPRIRTLVLSYAYHCCAFLPLLTSNRKVIGSPYKEEVFFPTDEKFDMSMWNNSINDIWPD
LNINFTSAFHSQMDDILQSYSNPYADFGYPSITNYPENDMYNGEESSVVQVQSYETNPML
VKCLPTPGPFLPCEDLFDWWTLRCGVWVVFLLALLGNGIVVFVLIFSRSKMDVPRFLVCN
LAAADFFMGIYLGFLAVIDASTLGEFRMYAIRWQMSVGCQLSGFLAVFSSELSVYTLAVI
TLERNYAITHAMHLNKRLSLRHASYIMSIGWIFALTMAVLPLFGVSDYRKYSVCLPMEVY
KGYGSLTYVIFLMFINGVAFLTLMGCYLKMYCAIRGSQAWNSNDSRIAKRMALLVFTDFL
CWSPIAFFSIATVLGWQLVTLEQAKVFTVFILPLNSCCNPFLYAILTKQFKKDCVMLCKA
IEESRVTRGIGRCRHSSNFSNRQTPGNTNSLNERSSRELPPLLPAHVCNCNRGKIIDQEE
VKRQLKVSSQPNMMARFWKRLFCSDGKKFERRNHRHMDYSYHIAEIKQKNHHKRAGSMSS
SDGNFSSSRSDSWKHGTPHHCGVPLRLLDPRRRHTSWLITRKTSQDSNLSSSRNDSSGSN
NTTATTASSTWRISRSNGSNIVIPGLNIPPSFATSNSSRQSLPGSKPRLVRQSAFHDETQ
EPATLLGVRYLPTIPSAPDSSVQLDDENESENFLVNQECVHLQNQQTYPTATTENSENLS
SPQSKPP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 49 | g4256.t1 | CDD | cd15136 | 7tmA_Glyco_hormone_R | 680 | 954 | 1.31599E-175 |
| 29 | g4256.t1 | Coils | Coil | Coil | 239 | 259 | - |
| 28 | g4256.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 94 | 321 | 3.0E-50 |
| 27 | g4256.t1 | Gene3D | G3DSA:1.20.1070.10 | - | 681 | 967 | 6.2E-50 |
| 91 | g4256.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1068 | 1099 | - |
| 88 | g4256.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1077 | 1092 | - |
| 90 | g4256.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1118 | 1151 | - |
| 89 | g4256.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1120 | 1151 | - |
| 87 | g4256.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1246 | 1267 | - |
| 8 | g4256.t1 | PANTHER | PTHR24372 | GLYCOPROTEIN HORMONE RECEPTOR | 117 | 222 | 9.8E-193 |
| 7 | g4256.t1 | PANTHER | PTHR24372 | GLYCOPROTEIN HORMONE RECEPTOR | 213 | 369 | 9.8E-193 |
| 6 | g4256.t1 | PANTHER | PTHR24372 | GLYCOPROTEIN HORMONE RECEPTOR | 344 | 1127 | 9.8E-193 |
| 21 | g4256.t1 | PRINTS | PR00373 | Glycoprotein hormone receptor signature | 670 | 687 | 5.7E-32 |
| 14 | g4256.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 681 | 705 | 4.7E-20 |
| 18 | g4256.t1 | PRINTS | PR00373 | Glycoprotein hormone receptor signature | 706 | 719 | 5.7E-32 |
| 9 | g4256.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 714 | 735 | 4.7E-20 |
| 16 | g4256.t1 | PRINTS | PR00373 | Glycoprotein hormone receptor signature | 746 | 759 | 5.7E-32 |
| 22 | g4256.t1 | PRINTS | PR00373 | Glycoprotein hormone receptor signature | 759 | 773 | 5.7E-32 |
| 10 | g4256.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 766 | 788 | 4.7E-20 |
| 11 | g4256.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 802 | 823 | 4.7E-20 |
| 17 | g4256.t1 | PRINTS | PR00373 | Glycoprotein hormone receptor signature | 820 | 831 | 5.7E-32 |
| 15 | g4256.t1 | PRINTS | PR00373 | Glycoprotein hormone receptor signature | 883 | 901 | 5.7E-32 |
| 13 | g4256.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 887 | 911 | 4.7E-20 |
| 19 | g4256.t1 | PRINTS | PR00373 | Glycoprotein hormone receptor signature | 917 | 933 | 5.7E-32 |
| 12 | g4256.t1 | PRINTS | PR00237 | Rhodopsin-like GPCR superfamily signature | 925 | 951 | 4.7E-20 |
| 20 | g4256.t1 | PRINTS | PR00373 | Glycoprotein hormone receptor signature | 946 | 965 | 5.7E-32 |
| 4 | g4256.t1 | Pfam | PF13855 | Leucine rich repeat | 122 | 180 | 3.7E-15 |
| 3 | g4256.t1 | Pfam | PF13855 | Leucine rich repeat | 242 | 301 | 4.5E-13 |
| 2 | g4256.t1 | Pfam | PF13855 | Leucine rich repeat | 334 | 390 | 4.4E-7 |
| 1 | g4256.t1 | Pfam | PF13855 | Leucine rich repeat | 427 | 486 | 6.0E-13 |
| 5 | g4256.t1 | Pfam | PF00001 | 7 transmembrane receptor (rhodopsin family) | 696 | 943 | 2.4E-30 |
| 38 | g4256.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 32 | - |
| 39 | g4256.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 18 | - |
| 40 | g4256.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 19 | 27 | - |
| 48 | g4256.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 28 | 32 | - |
| 37 | g4256.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 33 | 684 | - |
| 42 | g4256.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 685 | 706 | - |
| 30 | g4256.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 707 | 717 | - |
| 45 | g4256.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 718 | 741 | - |
| 36 | g4256.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 742 | 760 | - |
| 44 | g4256.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 761 | 782 | - |
| 33 | g4256.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 783 | 802 | - |
| 43 | g4256.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 803 | 825 | - |
| 34 | g4256.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 826 | 844 | - |
| 41 | g4256.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 845 | 870 | - |
| 32 | g4256.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 871 | 890 | - |
| 47 | g4256.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 891 | 914 | - |
| 35 | g4256.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 915 | 925 | - |
| 46 | g4256.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 926 | 946 | - |
| 31 | g4256.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 947 | 1267 | - |
| 101 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 121 | 142 | 6.865 |
| 104 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 145 | 166 | 6.996 |
| 95 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 169 | 190 | 5.017 |
| 105 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 193 | 214 | 7.003 |
| 97 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 217 | 238 | 5.841 |
| 107 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 242 | 263 | 7.543 |
| 99 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 266 | 287 | 7.165 |
| 92 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 290 | 311 | 7.889 |
| 102 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 314 | 335 | 8.713 |
| 96 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 358 | 380 | 4.87 |
| 106 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 381 | 402 | 4.57 |
| 100 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 405 | 426 | 7.227 |
| 103 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 427 | 448 | 7.612 |
| 98 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 451 | 472 | 5.741 |
| 94 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 475 | 496 | 7.104 |
| 93 | g4256.t1 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 499 | 520 | 5.417 |
| 108 | g4256.t1 | ProSiteProfiles | PS50262 | G-protein coupled receptors family 1 profile. | 696 | 943 | 30.783 |
| 76 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 118 | 142 | 70.0 |
| 60 | g4256.t1 | SMART | SM00364 | LRR_bac_2 | 119 | 138 | 360.0 |
| 85 | g4256.t1 | SMART | SM00365 | LRR_sd22_2 | 119 | 140 | 120.0 |
| 67 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 143 | 166 | 0.0036 |
| 81 | g4256.t1 | SMART | SM00365 | LRR_sd22_2 | 143 | 164 | 320.0 |
| 73 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 167 | 190 | 9.5 |
| 63 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 191 | 214 | 21.0 |
| 86 | g4256.t1 | SMART | SM00365 | LRR_sd22_2 | 191 | 212 | 150.0 |
| 62 | g4256.t1 | SMART | SM00364 | LRR_bac_2 | 215 | 234 | 100.0 |
| 69 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 215 | 238 | 0.32 |
| 74 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 239 | 263 | 160.0 |
| 61 | g4256.t1 | SMART | SM00364 | LRR_bac_2 | 240 | 258 | 150.0 |
| 77 | g4256.t1 | SMART | SM00365 | LRR_sd22_2 | 240 | 261 | 710.0 |
| 65 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 264 | 287 | 0.19 |
| 79 | g4256.t1 | SMART | SM00365 | LRR_sd22_2 | 264 | 282 | 390.0 |
| 59 | g4256.t1 | SMART | SM00364 | LRR_bac_2 | 288 | 307 | 19.0 |
| 75 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 288 | 311 | 0.85 |
| 84 | g4256.t1 | SMART | SM00365 | LRR_sd22_2 | 288 | 309 | 38.0 |
| 72 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 312 | 334 | 5.4 |
| 80 | g4256.t1 | SMART | SM00365 | LRR_sd22_2 | 312 | 333 | 0.082 |
| 57 | g4256.t1 | SMART | SM00364 | LRR_bac_2 | 356 | 376 | 580.0 |
| 68 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 379 | 402 | 120.0 |
| 58 | g4256.t1 | SMART | SM00364 | LRR_bac_2 | 403 | 422 | 34.0 |
| 82 | g4256.t1 | SMART | SM00365 | LRR_sd22_2 | 403 | 424 | 73.0 |
| 70 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 425 | 448 | 68.0 |
| 83 | g4256.t1 | SMART | SM00365 | LRR_sd22_2 | 425 | 451 | 700.0 |
| 64 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 449 | 472 | 8.6 |
| 66 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 473 | 496 | 0.0019 |
| 78 | g4256.t1 | SMART | SM00365 | LRR_sd22_2 | 473 | 505 | 44.0 |
| 71 | g4256.t1 | SMART | SM00369 | LRR_typ_2 | 497 | 520 | 90.0 |
| 25 | g4256.t1 | SUPERFAMILY | SSF52058 | L domain-like | 93 | 326 | 4.76E-49 |
| 24 | g4256.t1 | SUPERFAMILY | SSF52058 | L domain-like | 331 | 564 | 2.89E-37 |
| 23 | g4256.t1 | SUPERFAMILY | SSF81321 | Family A G protein-coupled receptor-like | 663 | 959 | 6.23E-52 |
| 26 | g4256.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 32 | - |
| 56 | g4256.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 685 | 707 | - |
| 50 | g4256.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 716 | 738 | - |
| 53 | g4256.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 760 | 782 | - |
| 55 | g4256.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 803 | 825 | - |
| 52 | g4256.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 845 | 867 | - |
| 51 | g4256.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 892 | 914 | - |
| 54 | g4256.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 924 | 946 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | BP |
| GO:0005515 | protein binding | MF |
| GO:0016500 | protein-hormone receptor activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0004930 | G protein-coupled receptor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K08399 (leucine-rich repeat-containing G protein-coupled receptor 6)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
