General information for g4256.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4256 is located on chr_2: 715209..718405 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4256 | g4256.t5 | isoform | g4256.t5 | 712612 | 715209 |
| chr_2 | g4256 | g4256.t5 | exon | g4256.t5.exon1 | 712612 | 714896 |
| chr_2 | g4256 | g4256.t5 | cds | g4256.t5.CDS1 | 714210 | 714878 |
| chr_2 | g4256 | g4256.t5 | exon | g4256.t5.exon2 | 714956 | 715055 |
| chr_2 | g4256 | g4256.t5 | exon | g4256.t5.exon3 | 715148 | 715209 |
| chr_2 | g4256 | g4256.t5 | TTS | g4256.t5 | 716128 | 716128 |
| chr_2 | g4256 | g4256.t5 | TSS | g4256.t5 | NA | NA |
Sequences
>g4256.t5 Gene=g4256 Length=2447
TGTAAGTTAAGCAAGACGAATACGAAATACACTTTAGCATCAGTTACTGTCACTTACATT
TGCTTTTCTTTTACTATTTTATTTACTATATTTTCTTATTATGTATAGGAATCTTGGTGA
AAATATTTTTCCAACATTGCCAACAGACGGTTTGCAGCGTTTACTTCATTTAAAAACATT
TAATAATCCAAGACTGAGAATTTTTCCACCGATTGAAGCTTTTCCACGCATAAGAACACT
TGTACTGTCTTATGCCTATCATTGCTGTGCATTTTTACCTCTACTGACAAGTAACAGAAA
AGTTATTGGCAGTCCTTATAAAGAAGAAGTATTTTTCCCAACTGATGAAAAATTTGATAT
GTCGATGTGGAATAATTCAATAAATGACATTTGGCCAGATTTAAATATAAACTTTACGAG
TGCATTTCACTCACAAATGGATGACATTCTACAATCATATTCAAATCCTTATGCTGATTT
TGGCTATCCAAGTATAACGAATTATCCTGAAAATGATATGTACAATGGTGAAGAGTCGAG
TGTTGTTCAGGTTCAATCTTATGAAACAAATCCAATGCTTGTTAAATGTCTACCGACACC
TGGTATTTATATACATACATAGTATAATTAGATAATGTCTATTATTCTTTTTCTATTTCT
TTTTTAAACAGGACCTTTTCTTCCTTGTGAAGATCTCTTTGATTGGTGGACACTTAGATG
TGGTGTATGGGTTGTCTTTTTACTTGCTCTTTTGGGAAATGGAATTGTTGTATTTGTATT
AATATTTTCTCGATCAAAAATGGATGTACCGAGATTTCTTGTATGTAATTTAGCTGCAGC
AGATTTCTTCATGGGTATTTATTTGGGTTTTTTGGCTGTCATCGATGCCTCAACTTTGGG
TGAATTTCGTATGTATGCGATTCGATGGCAAATGAGTGTTGGTTGTCAATTAAGTGGATT
TTTAGCTGTTTTTTCATCAGAATTATCTGTATATACATTAGCGGTTATTACATTAGAGAG
AAATTATGCAATTACACATGCAATGCATTTGAATAAACGACTATCGCTGCGCCATGCGAG
TTACATTATGAGCATAGGTTGGATTTTTGCACTAACTATGGCAGTTCTTCCTCTTTTTGG
AGTATCTGATTATCGAAAATATTCTGTATGTCTACCAATGGAGGTTTATAAAGGATATGG
AAGCTTAACATATGTAATATTTCTAATGTTTATCAATGGAGTAGCATTTCTTACATTAAT
GGGATGCTATTTAAAAATGTATTGTGCAATTCGTGGCTCACAAGCGTGGAATTCAAATGA
TTCGAGAATCGCAAAGAGAATGGCTTTATTAGTATTTACAGATTTTCTTTGTTGGTCACC
AATTGCCTTTTTTTCTATTGCTACAGTGCTCGGATGGCAATTGGTCACACTTGAACAAGC
AAAAGTTTTCACAGTCTTCATATTACCCTTAAATAGGTAATTTAAGCGTGATTCCCGTAT
ATATTATATATTGTAATTATTTATTATATTATTATTGCAGTTGCTGTAATCCCTTTCTCT
ATGCAATTTTAACAAAGCAATTCAAAAAAGATTGTGTGATGCTTTGCAAAGCAATAGAAG
AGTCACGTGTGACGCGAGGTATCGGGAGATGTCGACATAGTTCGAATTTTTCAAATCGTC
AAACGCCGGGAAATACAAACTCATTAAATGAACGCTCTTCTCGCGAATTACCTCCGTTAC
TTCCAGCTCATGTATGTAATTGTAATCGTGGCAAGATTATTGATCAAGAGGAAGTTAAAC
GTCAATTAAAAGTATCATCTCAACCAAACATGATGGCTAGATTTTGGAAGAGATTATTTT
GTAGTGATGGAAAAAAGTTCGAAAGGCGAAATCATAGACACATGGACTATTCTTATCATA
TTGCTGAAATTAAACAAAAGAACCATCATAAAAGAGCAGGATCAATGTCTTCGAGTGATG
GAAATTTCAGTTCATCGCGTTCTGATTCATGGAAACATGGCACTCCACATCATTGTGGTG
TACCTCTGAGATTACTTGATCCAAGAAGAAGACATACATCGTGGTTGATTACAAGAAAAA
CTTCACAAGACTCAAATCTTTCCAGTTCAAGAAATGATTCGTCTGGTTCTAATAACACGA
CTGCAACTACAGCAAGTTCAACTTGGCGTATTTCACGTTCTAATGGTTCAAATATTGTAA
TTCCTGGTTTGAATATACCTCCTTCTTTTGCCACATCAAGTAAATAAAAGCATAATGATG
ATTGCGAAGCAAACCTCGGTTGGTACGTCAATCAGCATTTCATGATGAAACACAAGAGCC
GGCAACACTACTAGGTGTGAGATATCTTCCGACAATACCCTCTGCACCCTACTGCCACAA
CAGAGAATTCAGAAAATCTGTCTAGTCCTCAAAGCAAGCCGCCATGA
>g4256.t5 Gene=g4256 Length=222
MLCKAIEESRVTRGIGRCRHSSNFSNRQTPGNTNSLNERSSRELPPLLPAHVCNCNRGKI
IDQEEVKRQLKVSSQPNMMARFWKRLFCSDGKKFERRNHRHMDYSYHIAEIKQKNHHKRA
GSMSSSDGNFSSSRSDSWKHGTPHHCGVPLRLLDPRRRHTSWLITRKTSQDSNLSSSRND
SSGSNNTTATTASSTWRISRSNGSNIVIPGLNIPPSFATSSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4256.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 42 | - |
| 3 | g4256.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 41 | - |
| 6 | g4256.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 144 | - |
| 5 | g4256.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 137 | - |
| 4 | g4256.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 196 | - |
| 1 | g4256.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 196 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
