General information for g427.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aladin.
Parent gene
- The parent gene g427 is located on chr_3: 3318881..3319484 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g427 | g427.t2 | TTS | g427.t2 | 3317960 | 3317960 |
| chr_3 | g427 | g427.t2 | isoform | g427.t2 | 3318573 | 3319306 |
| chr_3 | g427 | g427.t2 | exon | g427.t2.exon1 | 3318573 | 3319306 |
| chr_3 | g427 | g427.t2 | cds | g427.t2.CDS1 | 3318573 | 3319106 |
| chr_3 | g427 | g427.t2 | TSS | g427.t2 | 3319540 | 3319540 |
Sequences
>g427.t2 Gene=g427 Length=734
ATCCGGAGATCAATATTAGCAGAGAAATCTATAATTCGCACATTTCAAGGCAAGATCATC
TAATATTGCCAGTACAAGAACCGTTTGTGAAACAATTAGCAAGAACTTTTTTCGATGAAG
GAGTTAAATCTTCACTTAATCTTCTCAAAGATTCAAATCTTAGTCTTTTCTCACAACTAT
CAAATGGAATTCTTAAAATAATGAATTATGGCAATCGCATTAAAATGTTTTTCAATCCAC
ATCTACGTGAAATTGGTATTGAAAATTATGAAAACTTTTCGCAAGTTCGTCAATGGAAAA
ATGCAACTGTGAGATTTCTAGCATTTCATCCGCAATGCTTTAAAATTGCTATAGCTAGTG
TTGATGATACAATAAGAATCTACACAAATGATGAAAATTCGATTGTGCCATTACTCAAAA
ATTCACAGCAAAAATCAATTTTTACACTTGCATGGCGACCTTTTTCTCCTTCAACTCTTG
TTGTCGGTTGCCAAAATGGAATTTTAATTTGGACCATAGATCCAAGTTCGAATATAAGTC
GCCCACTATCTTCAGCAGTACATTATCGTCATGAAAATCATTTTCCAGTCACTTCTGTTG
AATTTAATCACAATGGAAGTCTTTTAGCGACTGCAAGTTTAAAAGATACATCGATTTTAA
TATGGAATATTGATAAAATGTCTTGTACACCACTAAAAAAGACTTCAATTCCTTTTCTTA
ATTTGCAATGGAGC
>g427.t2 Gene=g427 Length=178
MNYGNRIKMFFNPHLREIGIENYENFSQVRQWKNATVRFLAFHPQCFKIAIASVDDTIRI
YTNDENSIVPLLKNSQQKSIFTLAWRPFSPSTLVVGCQNGILIWTIDPSSNISRPLSSAV
HYRHENHFPVTSVEFNHNGSLLATASLKDTSILIWNIDKMSCTPLKKTSIPFLNLQWS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g427.t2 | Gene3D | G3DSA:2.130.10.10 | - | 9 | 169 | 3.1E-19 |
| 2 | g427.t2 | PANTHER | PTHR14494 | ALADIN/ADRACALIN/AAAS | 9 | 178 | 1.3E-46 |
| 1 | g427.t2 | Pfam | PF00400 | WD domain, G-beta repeat | 126 | 156 | 2.8E-5 |
| 7 | g427.t2 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 143 | 157 | - |
| 9 | g427.t2 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 30 | 165 | 9.678 |
| 4 | g427.t2 | SMART | SM00320 | WD40_4 | 25 | 62 | 0.58 |
| 6 | g427.t2 | SMART | SM00320 | WD40_4 | 67 | 105 | 4.0 |
| 5 | g427.t2 | SMART | SM00320 | WD40_4 | 114 | 156 | 0.0067 |
| 3 | g427.t2 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 24 | 177 | 8.06E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed