General information for g4277.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative HEAT repeat-containing protein 3.
Parent gene
- The parent gene g4277 is located on chr_2: 890971..892264 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4277 | g4277.t1 | TSS | g4277.t1 | 888358 | 888358 |
| chr_2 | g4277 | g4277.t1 | isoform | g4277.t1 | 888448 | 890971 |
| chr_2 | g4277 | g4277.t1 | exon | g4277.t1.exon1 | 888448 | 889039 |
| chr_2 | g4277 | g4277.t1 | cds | g4277.t1.CDS1 | 888448 | 889039 |
| chr_2 | g4277 | g4277.t1 | exon | g4277.t1.exon2 | 889100 | 889731 |
| chr_2 | g4277 | g4277.t1 | cds | g4277.t1.CDS2 | 889100 | 889731 |
| chr_2 | g4277 | g4277.t1 | exon | g4277.t1.exon3 | 890189 | 890788 |
| chr_2 | g4277 | g4277.t1 | cds | g4277.t1.CDS3 | 890189 | 890788 |
| chr_2 | g4277 | g4277.t1 | exon | g4277.t1.exon4 | 890849 | 890971 |
| chr_2 | g4277 | g4277.t1 | cds | g4277.t1.CDS4 | 890849 | 890971 |
| chr_2 | g4277 | g4277.t1 | TTS | g4277.t1 | 891053 | 891053 |
Sequences
>g4277.t1 Gene=g4277 Length=1947
ATGGGTAAGACTAAAAAAGGTGGTTCAAAGCCACACAAAAAGAATCCAACAGGATTGAGT
TCGCTTGCATCATTAGATATCGATGAAAATCCGAATTCTTCACGTGGGCCAATAGTAAAT
ATCATTGAACAACTTCAAAGTACTAGTAATGATGAGAAAATGTGCGGATTACAAACATTA
TCGACATTATGTCAAAGAGAACAAAATATTAAAGGCATAATGAACAGTGAACTTATTAGA
ATTGTATTTCCATTACTTGTGGATAATGACGAAAACATTCGCCATGCTTGTGCTGGAAGT
TTAAGAAATTTATCAGCTGTATCTGCCGATGTCTGTGAAAAATTAGTTGAGCTTGACATC
TTTACTCCACTACAAATTCTATTAAATGAATATGCACATAGTGAATGGACTCCAGTTATC
GACGGTAAAGTCAACGCATTAAATCAAAAATCAGACACATTTCTGCAAGCAGTGAATATA
GTTTGGAATCTTTGCGAAAGCACATCTGTAGCTCTTGACTTCTTCAATCAATCACAATTG
CTACAAAGTCTTATGAGATGTTTAAATCATGAAGTTTTTGGAATGGATATTGCTATTTCA
GTAGCTCAGTGTTTGCTCGTTATATCTGAAGACAATCCCATTTCATGGAAAATTTTAGCA
GAATATGCAACAGACTTTCAAACCATTCTCAAAATAGAAGGAAATCATAAAGCAACAATC
TTGAGGACAGTAATTGCTGGCGTTTGTTCAAATGTTCCAATGTTATCAATGCAAAATTTA
AGTTTAATAATAGAAGCATTAAGTAAAACTGTGGAAGTTAATCATAGACAAATTTTAAAT
GAGCTTACAAGCCGTTTACCAATAAGCGAAAGTGAAGCTGAACAAAAAGAAATGACATCA
GTTGAGATTATCGACGAAGAAATGGATGAAGAGACTGAAACTGAAGCATCTGAACGCCGC
TTAAGAGAAGATATGCCTACAGAATTAGATAATGATATTAAAGATGTTGGTTATTTGCTA
TCAGCTCAAAGAATAGCCGCAGAGGTTTTAACTAATATCTGCTCTACAGAAGATAATGAT
ATGAGTGAAGGAATGGATGATTCAGATCCTGAGAGTGTGCATGATTATGACGTCTCAGAG
CAACAAAATGGTAATCAAGTTACTGCAGATAAAATTTCGACTGAAATTTCTGAATCAATT
CGGGCACATAAAATTGTTGAGAAGCTTTGGGAGAGATCACAGCCATTAGCAGAAAATGTT
AGAGAAATTTTGTATGTATCAGGACGTAATCTTTTCAAAAGACAGAATGCAATGCGTGTA
GCATCATTGTTGTGCCTTCATAATTTATGTAATGCGATGACAACAGAAGAGCTTGGTGGT
CCATCCGCAATTTATAATGTATGGCTTGATTTAGGTCAGCAAACATTTCAAATTCAACAA
GATTACGAAAGTCTTGAAGCTTCAACATCTCTCATGCGTGCAACACTCGAACATTTAAAG
AAATCACCAGAACTTTTCCGAGAAGTATCTGACACCGATTTGCAATTAATTCTTGACGGA
ATTCGAACTTGTGATAAATCCGAGGTGAGAGCAAATTGGCTTCGTATGCTTGGCATTTTG
GGATGCTTATTGCCAGAAGCACTTGTTAAAAAAATTACTGAATTCATACTTGAGACAACA
CTGAAAGAAGATGATGTATGGACAATATCGGAAGCACTCGACAGTTTTATGGACATGTTT
TCAGACAATGATTGGAATCAAATTGTTTATGAGTTGAATGTTATAACAAAATCAAAGGAA
CTCGAAAAAATTCTCAAGACTAAGATCAAACAACGTAGAAGAGAATTGGGTGATCGTTAT
TCAGCTGTTATTACCATAAAAACCAATTTCTCACGTTTTTGTAAGTATCTTGAGACACAG
CAAAAAAAATTTGTACCAAGTCATTAA
>g4277.t1 Gene=g4277 Length=648
MGKTKKGGSKPHKKNPTGLSSLASLDIDENPNSSRGPIVNIIEQLQSTSNDEKMCGLQTL
STLCQREQNIKGIMNSELIRIVFPLLVDNDENIRHACAGSLRNLSAVSADVCEKLVELDI
FTPLQILLNEYAHSEWTPVIDGKVNALNQKSDTFLQAVNIVWNLCESTSVALDFFNQSQL
LQSLMRCLNHEVFGMDIAISVAQCLLVISEDNPISWKILAEYATDFQTILKIEGNHKATI
LRTVIAGVCSNVPMLSMQNLSLIIEALSKTVEVNHRQILNELTSRLPISESEAEQKEMTS
VEIIDEEMDEETETEASERRLREDMPTELDNDIKDVGYLLSAQRIAAEVLTNICSTEDND
MSEGMDDSDPESVHDYDVSEQQNGNQVTADKISTEISESIRAHKIVEKLWERSQPLAENV
REILYVSGRNLFKRQNAMRVASLLCLHNLCNAMTTEELGGPSAIYNVWLDLGQQTFQIQQ
DYESLEASTSLMRATLEHLKKSPELFREVSDTDLQLILDGIRTCDKSEVRANWLRMLGIL
GCLLPEALVKKITEFILETTLKEDDVWTISEALDSFMDMFSDNDWNQIVYELNVITKSKE
LEKILKTKIKQRRRELGDRYSAVITIKTNFSRFCKYLETQQKKFVPSH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4277.t1 | Gene3D | G3DSA:1.25.10.10 | - | 19 | 286 | 1.5E-16 |
| 4 | g4277.t1 | Gene3D | G3DSA:1.25.10.10 | - | 338 | 648 | 1.4E-8 |
| 3 | g4277.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - |
| 1 | g4277.t1 | PANTHER | PTHR13347 | UNCHARACTERIZED | 1 | 640 | 7.0E-104 |
| 2 | g4277.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 38 | 613 | 7.56E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K24812 (HEAT repeat-containing protein 3)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
