General information for g4277.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative HEAT repeat-containing protein 3.
Parent gene
- The parent gene g4277 is located on chr_2: 890971..892264 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4277 | g4277.t4 | TSS | g4277.t4 | 888358 | 888358 |
| chr_2 | g4277 | g4277.t4 | isoform | g4277.t4 | 888448 | 890971 |
| chr_2 | g4277 | g4277.t4 | exon | g4277.t4.exon1 | 888448 | 889043 |
| chr_2 | g4277 | g4277.t4 | exon | g4277.t4.exon2 | 889100 | 889731 |
| chr_2 | g4277 | g4277.t4 | cds | g4277.t4.CDS1 | 889267 | 889731 |
| chr_2 | g4277 | g4277.t4 | exon | g4277.t4.exon3 | 890189 | 890788 |
| chr_2 | g4277 | g4277.t4 | cds | g4277.t4.CDS2 | 890189 | 890788 |
| chr_2 | g4277 | g4277.t4 | exon | g4277.t4.exon4 | 890849 | 890971 |
| chr_2 | g4277 | g4277.t4 | cds | g4277.t4.CDS3 | 890849 | 890971 |
| chr_2 | g4277 | g4277.t4 | TTS | g4277.t4 | 891053 | 891053 |
Sequences
>g4277.t4 Gene=g4277 Length=1951
ATGGGTAAGACTAAAAAAGGTGGTTCAAAGCCACACAAAAAGAATCCAACAGGATTGAGT
TCGCTTGCATCATTAGATATCGATGAAAATCCGAATTCTTCACGTGGGCCAATAGTAAAT
ATCATTGAACAACTTCAAAGTACTAGTAATGATGAGAAAATGTGCGGATTACAAACATTA
TCGACATTATGTCAAAGAGAACAAAATATTAAAGGCATAATGAACAGTGAACTTATTAGA
ATTGTATTTCCATTACTTGTGGATAATGACGAAAACATTCGCCATGCTTGTGCTGGAAGT
TTAAGAAATTTATCAGCTGTATCTGCCGATGTCTGTGAAAAATTAGTTGAGCTTGACATC
TTTACTCCACTACAAATTCTATTAAATGAATATGCACATAGTGAATGGACTCCAGTTATC
GACGGTAAAGTCAACGCATTAAATCAAAAATCAGACACATTTCTGCAAGCAGTGAATATA
GTTTGGAATCTTTGCGAAAGCACATCTGTAGCTCTTGACTTCTTCAATCAATCACAATTG
CTACAAAGTCTTATGAGATGTTTAAATCATGAAGTTTTTGGAATGGATATTGGTGACTAT
TTCAGTAGCTCAGTGTTTGCTCGTTATATCTGAAGACAATCCCATTTCATGGAAAATTTT
AGCAGAATATGCAACAGACTTTCAAACCATTCTCAAAATAGAAGGAAATCATAAAGCAAC
AATCTTGAGGACAGTAATTGCTGGCGTTTGTTCAAATGTTCCAATGTTATCAATGCAAAA
TTTAAGTTTAATAATAGAAGCATTAAGTAAAACTGTGGAAGTTAATCATAGACAAATTTT
AAATGAGCTTACAAGCCGTTTACCAATAAGCGAAAGTGAAGCTGAACAAAAAGAAATGAC
ATCAGTTGAGATTATCGACGAAGAAATGGATGAAGAGACTGAAACTGAAGCATCTGAACG
CCGCTTAAGAGAAGATATGCCTACAGAATTAGATAATGATATTAAAGATGTTGGTTATTT
GCTATCAGCTCAAAGAATAGCCGCAGAGGTTTTAACTAATATCTGCTCTACAGAAGATAA
TGATATGAGTGAAGGAATGGATGATTCAGATCCTGAGAGTGTGCATGATTATGACGTCTC
AGAGCAACAAAATGGTAATCAAGTTACTGCAGATAAAATTTCGACTGAAATTTCTGAATC
AATTCGGGCACATAAAATTGTTGAGAAGCTTTGGGAGAGATCACAGCCATTAGCAGAAAA
TGTTAGAGAAATTTTGTATGTATCAGGACGTAATCTTTTCAAAAGACAGAATGCAATGCG
TGTAGCATCATTGTTGTGCCTTCATAATTTATGTAATGCGATGACAACAGAAGAGCTTGG
TGGTCCATCCGCAATTTATAATGTATGGCTTGATTTAGGTCAGCAAACATTTCAAATTCA
ACAAGATTACGAAAGTCTTGAAGCTTCAACATCTCTCATGCGTGCAACACTCGAACATTT
AAAGAAATCACCAGAACTTTTCCGAGAAGTATCTGACACCGATTTGCAATTAATTCTTGA
CGGAATTCGAACTTGTGATAAATCCGAGGTGAGAGCAAATTGGCTTCGTATGCTTGGCAT
TTTGGGATGCTTATTGCCAGAAGCACTTGTTAAAAAAATTACTGAATTCATACTTGAGAC
AACACTGAAAGAAGATGATGTATGGACAATATCGGAAGCACTCGACAGTTTTATGGACAT
GTTTTCAGACAATGATTGGAATCAAATTGTTTATGAGTTGAATGTTATAACAAAATCAAA
GGAACTCGAAAAAATTCTCAAGACTAAGATCAAACAACGTAGAAGAGAATTGGGTGATCG
TTATTCAGCTGTTATTACCATAAAAACCAATTTCTCACGTTTTTGTAAGTATCTTGAGAC
ACAGCAAAAAAAATTTGTACCAAGTCATTAA
>g4277.t4 Gene=g4277 Length=395
MLSMQNLSLIIEALSKTVEVNHRQILNELTSRLPISESEAEQKEMTSVEIIDEEMDEETE
TEASERRLREDMPTELDNDIKDVGYLLSAQRIAAEVLTNICSTEDNDMSEGMDDSDPESV
HDYDVSEQQNGNQVTADKISTEISESIRAHKIVEKLWERSQPLAENVREILYVSGRNLFK
RQNAMRVASLLCLHNLCNAMTTEELGGPSAIYNVWLDLGQQTFQIQQDYESLEASTSLMR
ATLEHLKKSPELFREVSDTDLQLILDGIRTCDKSEVRANWLRMLGILGCLLPEALVKKIT
EFILETTLKEDDVWTISEALDSFMDMFSDNDWNQIVYELNVITKSKELEKILKTKIKQRR
RELGDRYSAVITIKTNFSRFCKYLETQQKKFVPSH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g4277.t4 | PANTHER | PTHR13347 | UNCHARACTERIZED | 28 | 387 | 0e+00 |
| g4277.t4 | SUPERFAMILY | SSF48371 | ARM repeat | 90 | 331 | 3e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
