General information for g4277.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative HEAT repeat-containing protein 3.
Parent gene
- The parent gene g4277 is located on chr_2: 890971..892264 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4277 | g4277.t6 | TSS | g4277.t6 | 888358 | 888358 |
| chr_2 | g4277 | g4277.t6 | isoform | g4277.t6 | 889298 | 890971 |
| chr_2 | g4277 | g4277.t6 | exon | g4277.t6.exon1 | 889298 | 889731 |
| chr_2 | g4277 | g4277.t6 | cds | g4277.t6.CDS1 | 889399 | 889731 |
| chr_2 | g4277 | g4277.t6 | exon | g4277.t6.exon2 | 890189 | 890788 |
| chr_2 | g4277 | g4277.t6 | cds | g4277.t6.CDS2 | 890189 | 890788 |
| chr_2 | g4277 | g4277.t6 | exon | g4277.t6.exon3 | 890849 | 890971 |
| chr_2 | g4277 | g4277.t6 | cds | g4277.t6.CDS3 | 890849 | 890971 |
| chr_2 | g4277 | g4277.t6 | TTS | g4277.t6 | 891053 | 891053 |
Sequences
>g4277.t6 Gene=g4277 Length=1157
TAGAAGCATTAAGTAAAACTGTGGAAGTTAATCATAGACAAATTTTAAATGAGCTTACAA
GCCGTTTACCAATAAGCGAAAGTGAAGCTGAACAAAAAGAAATGACATCAGTTGAGATTA
TCGACGAAGAAATGGATGAAGAGACTGAAACTGAAGCATCTGAACGCCGCTTAAGAGAAG
ATATGCCTACAGAATTAGATAATGATATTAAAGATGTTGGTTATTTGCTATCAGCTCAAA
GAATAGCCGCAGAGGTTTTAACTAATATCTGCTCTACAGAAGATAATGATATGAGTGAAG
GAATGGATGATTCAGATCCTGAGAGTGTGCATGATTATGACGTCTCAGAGCAACAAAATG
GTAATCAAGTTACTGCAGATAAAATTTCGACTGAAATTTCTGAATCAATTCGGGCACATA
AAATTGTTGAGAAGCTTTGGGAGAGATCACAGCCATTAGCAGAAAATGTTAGAGAAATTT
TGTATGTATCAGGACGTAATCTTTTCAAAAGACAGAATGCAATGCGTGTAGCATCATTGT
TGTGCCTTCATAATTTATGTAATGCGATGACAACAGAAGAGCTTGGTGGTCCATCCGCAA
TTTATAATGTATGGCTTGATTTAGGTCAGCAAACATTTCAAATTCAACAAGATTACGAAA
GTCTTGAAGCTTCAACATCTCTCATGCGTGCAACACTCGAACATTTAAAGAAATCACCAG
AACTTTTCCGAGAAGTATCTGACACCGATTTGCAATTAATTCTTGACGGAATTCGAACTT
GTGATAAATCCGAGGTGAGAGCAAATTGGCTTCGTATGCTTGGCATTTTGGGATGCTTAT
TGCCAGAAGCACTTGTTAAAAAAATTACTGAATTCATACTTGAGACAACACTGAAAGAAG
ATGATGTATGGACAATATCGGAAGCACTCGACAGTTTTATGGACATGTTTTCAGACAATG
ATTGGAATCAAATTGTTTATGAGTTGAATGTTATAACAAAATCAAAGGAACTCGAAAAAA
TTCTCAAGACTAAGATCAAACAACGTAGAAGAGAATTGGGTGATCGTTATTCAGCTGTTA
TTACCATAAAAACCAATTTCTCACGTTTTTGTAAGTATCTTGAGACACAGCAAAAAAAAT
TTGTACCAAGTCATTAA
>g4277.t6 Gene=g4277 Length=351
MTSVEIIDEEMDEETETEASERRLREDMPTELDNDIKDVGYLLSAQRIAAEVLTNICSTE
DNDMSEGMDDSDPESVHDYDVSEQQNGNQVTADKISTEISESIRAHKIVEKLWERSQPLA
ENVREILYVSGRNLFKRQNAMRVASLLCLHNLCNAMTTEELGGPSAIYNVWLDLGQQTFQ
IQQDYESLEASTSLMRATLEHLKKSPELFREVSDTDLQLILDGIRTCDKSEVRANWLRML
GILGCLLPEALVKKITEFILETTLKEDDVWTISEALDSFMDMFSDNDWNQIVYELNVITK
SKELEKILKTKIKQRRRELGDRYSAVITIKTNFSRFCKYLETQQKKFVPSH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4277.t6 | Gene3D | G3DSA:1.25.10.10 | - | 36 | 351 | 8.7E-10 |
| 3 | g4277.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - |
| 4 | g4277.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - |
| 5 | g4277.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 91 | - |
| 1 | g4277.t6 | PANTHER | PTHR13347 | UNCHARACTERIZED | 11 | 343 | 1.7E-49 |
| 2 | g4277.t6 | SUPERFAMILY | SSF48371 | ARM repeat | 45 | 317 | 1.73E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
