General information for g428.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g428 is located on chr_3: 3319589..3320950 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g428 | g428.t4 | TTS | g428.t4 | 3319495 | 3319495 |
| chr_3 | g428 | g428.t4 | isoform | g428.t4 | 3319589 | 3320881 |
| chr_3 | g428 | g428.t4 | exon | g428.t4.exon1 | 3319589 | 3319908 |
| chr_3 | g428 | g428.t4 | cds | g428.t4.CDS1 | 3319589 | 3319908 |
| chr_3 | g428 | g428.t4 | exon | g428.t4.exon2 | 3320029 | 3320255 |
| chr_3 | g428 | g428.t4 | cds | g428.t4.CDS2 | 3320029 | 3320194 |
| chr_3 | g428 | g428.t4 | exon | g428.t4.exon3 | 3320335 | 3320881 |
| chr_3 | g428 | g428.t4 | TSS | g428.t4 | 3321022 | 3321022 |
Sequences
>g428.t4 Gene=g428 Length=1094
ATGTTTGATGATTGGAATAATTTGCCAGACAACGTAACAAGAGAGATATTTTCATATTTG
AATTTTAAAGATTTATTTTTAAATGCATCATTTGTTTGTCAAAGTTGGTACGATTATATT
GGAAAAAGCAAAGAATGTATGGATAAAGTTCGGTTAAAAATAGAAGGATGGCATGATTTA
GAAATTATCTCTGATATTCTTTTACGAAATAGTCCTCGAATTTACAATTCCTTGATATTC
TACAATTTAAATGCTGAGAAGAAATTTCCTTATTTATTGCAACGAAGATGGAAAGATGTT
AAGCTTACACAAATGAAATTCATCTCAGCTAAAAAGTTCTATGAATATTTAAAAGAGTTT
GGCGAGGATCTTGAATCACTTGAAATTGAGAGAATTGTAATAATCAAAGGCGATGAAATG
TGCGATCAAACACTTGTGTTACCAAAATTAAGACACCTTAAACTAAAGCAAGTTCCAACA
TCAGCTTTTCAAGTATTTCAACGATACCCAAACATAAAATCACTACATTTCGATATACCT
GCATTTGAAATTCTCTTTACGGTTTACCAGAGACTGCTCATAAATTAATCGAGTCAATCA
TCATCTCAATGACAGCTACACTAGATTATATTGAATTGAAAAATTGGGGATATTGTCATA
CTCTTGAATGCATTTGGAATGCTATGAAAGCAAAATATTTTTCAATTAATGTTTGCTCAC
ATGTGCCAATTACAAGAAATTTATTAGATTTGTCCCCAAATACATATCTAAAGACTGCTC
ATTATTTGCGAAAATTAAAAGTGCTCTCATATAAATCCTGCATTATTGAAGTAGCATGTG
AAGAACATGAACTTGATGAATTTTCAGAAGAAGAAGAAGACAGTGATCCAGGATCGAATT
ATAATTTTTTAGGTCCAAATGAAGTGTTTGAATTGAGTAAATTTAATGAACGTCCGAATA
TGGTGAAAAGATATAAAGATGAGAAATTAAGCATAGATTTTGCATATGTTTATTATCGAG
AGTTGATTAGTCGAGAAACAAACATAAATCAACATATTAGACTTGAAAAGCTCTCATTTG
ATAATTGGAAATAA
>g428.t4 Gene=g428 Length=161
MTATLDYIELKNWGYCHTLECIWNAMKAKYFSINVCSHVPITRNLLDLSPNTYLKTAHYL
RKLKVLSYKSCIIEVACEEHELDEFSEEEEDSDPGSNYNFLGPNEVFELSKFNERPNMVK
RYKDEKLSIDFAYVYYRELISRETNINQHIRLEKLSFDNWK
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
