General information for g4285.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4285 is located on chr_2: 975205..975546 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4285 | g4285.t1 | isoform | g4285.t1 | 975205 | 975546 |
| chr_2 | g4285 | g4285.t1 | exon | g4285.t1.exon1 | 975205 | 975546 |
| chr_2 | g4285 | g4285.t1 | cds | g4285.t1.CDS1 | 975205 | 975546 |
| chr_2 | g4285 | g4285.t1 | TSS | g4285.t1 | NA | NA |
| chr_2 | g4285 | g4285.t1 | TTS | g4285.t1 | NA | NA |
Sequences
>g4285.t1 Gene=g4285 Length=342
ATGCCAATATTTCCTCATCGGAAGTTTACACCAAAACTTCCAAAGCAGAGAGAATTGAGA
TTAAATTCTGTACCCAAATTCACAGAGGATATTGACGATTTTCGGAATATCAAATTAAAA
TTGAATGCTGAAAAGGAGTTTCAGTTTGCGGATGGTGTTTGGATAAGTTTGAAGAGAAAT
CAAGCAGAGACGTTTGACGATATAACGAGAATTGTGACGGCAAATAAAAAATTAAAGGAT
GAGAATTCTATGTTTAATGTGAAAATTGATATAATGCTGGATTTACTAACTGAATGTGAA
GCTGAAAAGGATGCGATTTTGAGGAAACAGAATGTAATTTAA
>g4285.t1 Gene=g4285 Length=113
MPIFPHRKFTPKLPKQRELRLNSVPKFTEDIDDFRNIKLKLNAEKEFQFADGVWISLKRN
QAETFDDITRIVTANKKLKDENSMFNVKIDIMLDLLTECEAEKDAILRKQNVI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g4285.t1 | Pfam | PF14645 | Chibby family | 1 | 104 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K23402 (protein chibby 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed